# Ignore everything
*

# Un-ignore specific files in root
!README.md
!requirements.txt
!train_aladin.sh
!benchmark_delineation.py
!benchmark_diagnosis.py
!demo.py
!test.py
!run.sh
!CMakeLists.txt
!pyproject.toml
!benchmark_delineation.sh
!benchmark_diagnosis_CINC.sh
!benchmark_diagnosis_STANFORD.sh

# benchmark folder
!benchmark/
!benchmark/* 
!benchmark/weights/
benchmark/weights/*.pth
!benchmark/diagnosis/

!utils/
!utils/**

# data folder and selected files
!data/
!data/arrhythmia_classes.csv
!data/results_all_F1_scores_for_each_classification_type.csv
!data/demo/
!data/demo/**

!data/resources/
!data/resources/**

!data/MongoDB/
!data/MongoDB/docker-compose.yml

!data/nnUNet_plans/
!data/nnUNet_plans/**

!data/STANFORD/
!data/STANFORD/RECORDS

!data/CINC/
!data/CINC/download.sh
!data/CINC/RECORDS
!data/CINC/REFERENCE-v3.csv

# nnUNet
!nnUNet/
nnUNet/build/
nnUNet/.egg-info
nnUNet/.github
nnUNet/.gitignore
!nnUNet/LICENSE
!nnUNet/README.md
!nnUNet/nnunetv2/
!nnUNet/nnunetv2/**

# aladin
!aladin/
!aladin/**
*.pyc
aladin/.egg-info
aladin/build
!aladin/src/utils/add_gender_to_mongo.py

# utils and paper
!utils/
!paper/
!paper/boxplot-cinc.py
!paper/boxplot-stanford.py
!paper/generate_results_tables.py
!paper/plot-featurespace-aladin.py
!paper/plot-featurespace-ref.py



!.gitignore
!.github/
!.github/workflows/
<<<<<<< HEAD
!.github/ orkflows/**
=======
!.github/workflows/**
>>>>>>> dcb1b77f741757db6b6ce30d6a86dba8ca2e35b4
