pandas
numpy
h5py
matplotlib
tiffslide
numcodecs<0.16
opencv-python-headless
hydra-core
geopandas
scikit-learn
transformers<4.46
gdown>=4.6.0
shapely>=2.0.7
einops>=0.8.1
einops-exts>=0.0.4
setuptools
configargparse>=1.7.1
environs
sacremoses
tqdm
pyarrow>=23.0.1
ml-dtypes>=0.2

[convert]
pyvips
aicsimageio

[cucim]
cucim

[distributed]
azure-batch
azure-storage-blob
azure-storage-file-share
azure-identity
boto3
fsspec
s3fs
adlfs

[fastattn]
fairscale
torch==2.11.0
torchvision
xformers>=0.0.34
flash-attn==2.6.3
timm>=1.0.3
omegaconf
torchmetrics==0.10.3
fvcore
iopath
webdataset
lifelines
scikit-survival
wandb
open-clip-torch
ninja==1.11.1.1

[tensorflow-cpu]
tensorflow
keras
tf-keras
torch<2.6
torchvision
open-clip-torch

[tensorflow-gpu]
tensorflow[and-cuda]<=2.19.0
keras
tf-keras
huggingface_hub<0.20
torch<2.6
torchvision
open-clip-torch

[torch-cpu]
torch<2.6
torchvision
open-clip-torch
segmentation-models-pytorch

[torch-gpu]
torch<2.6
torchvision
open-clip-torch
segmentation-models-pytorch

[umap]
umap-learn

[zarr]
zarr
ome-zarr
