.gitignore
.release-please-manifest.json
AGENTS.md
CHANGELOG.md
LICENSE
MANIFEST.in
README.md
SECURITY.md
pyproject.toml
release-please-config.json
.github/dependabot.yml
.github/workflows/ci.yml
.github/workflows/release.yml
.scryer/.gitignore
.scryer/model.scry
conda-forge/recipe/meta.yaml
docs/graph_output_token_comparison.md
docs/release.md
scripts/check_release_gate.py
scripts/compare_graph_output_tokens.py
scripts/smoke_built_wheel.py
src/cbasegraph.egg-info/PKG-INFO
src/cbasegraph.egg-info/SOURCES.txt
src/cbasegraph.egg-info/dependency_links.txt
src/cbasegraph.egg-info/entry_points.txt
src/cbasegraph.egg-info/requires.txt
src/cbasegraph.egg-info/top_level.txt
src/codebase_graph/__init__.py
src/codebase_graph/diagnostics.py
src/codebase_graph/paths.py
src/codebase_graph/cli/__init__.py
src/codebase_graph/core/__init__.py
src/codebase_graph/core/graph.py
src/codebase_graph/db/__init__.py
src/codebase_graph/db/query.py
src/codebase_graph/db/schema.py
src/codebase_graph/db/store.py
src/codebase_graph/extract/__init__.py
src/codebase_graph/extract/graph_builder.py
src/codebase_graph/ingest/__init__.py
src/codebase_graph/ingest/document_parser.py
src/codebase_graph/ingest/materializer.py
src/codebase_graph/ingest/tree_sitter_parser.py
src/codebase_graph/mcp/__init__.py
src/codebase_graph/mcp/graph_commands.py
src/codebase_graph/mcp/protocol.py
src/codebase_graph/mcp/runtime.py
src/codebase_graph/mcp/server.py
src/codebase_graph/mcp/tools.py
src/codebase_graph/mcp/transports/__init__.py
src/codebase_graph/mcp/transports/http.py
src/codebase_graph/mcp/transports/stdio.py
src/codebase_graph/memory/__init__.py
src/codebase_graph/ontology/__init__.py
src/codebase_graph/ontology/ontology.py
src/codebase_graph/reasoning/__init__.py
src/codebase_graph/reasoning/architecture_queries.py
src/codebase_graph/reasoning/context_builder.py
src/codebase_graph/retrieval/__init__.py
src/codebase_graph/retrieval/block_format.py
src/codebase_graph/retrieval/search.py
src/codebase_graph/setup/__init__.py
src/codebase_graph/setup/descriptor.py
src/codebase_graph/setup/installer.py
src/codebase_graph/setup/instructions.py
src/codebase_graph/setup/mcp_config.py
src/codebase_graph/setup/orchestrator.py
src/codebase_graph/setup/preflight.py
src/codebase_graph/setup/state.py
src/codebase_graph/setup/clients/__init__.py
src/codebase_graph/setup/clients/base.py
src/codebase_graph/setup/clients/codex.py
src/codebase_graph/setup/clients/hermes.py
src/codebase_graph/setup/clients/json_clients.py
tests/test_architecture_queries.py
tests/test_diagnostics.py
tests/test_graph_builder.py
tests/test_graph_output_block_format.py
tests/test_materializer.py
tests/test_mcp_entrypoint.py
tests/test_mcp_installer.py
tests/test_mcp_portability.py
tests/test_ontology.py
tests/test_release_workflows.py
tests/test_schema.py
tests/test_search.py
tests/test_setup_workflow.py
tests/fixtures/search_service_graph_search.json
tests/fixtures/sample_project/README.md
tests/fixtures/sample_project/pyproject.toml
tests/fixtures/sample_project/sample_project/__init__.py
tests/fixtures/sample_project/sample_project/cli.py
tests/fixtures/sample_project/sample_project/service.py