pandas
pymupdf<=1.27
requests
scipy>=1.16.3
scispacy
numpy<2.0,>=1.26
spacy<3.8.0,>=3.0.0
beautifulsoup4
biopython
transformers
torch
openpyxl
click>=8.1
openai
python-dotenv
setuptools
spacy-layout
tenacity

[dev]
build
bumpversion
coverage[toml]
pytest
pytest-cov
ruff
sphinx
sphinx_rtd_theme
sphinx-autoapi
myst_parser
jupyter
ipykernel
fuzzywuzzy
pytest-mock
boto3

[docs]
sphinx
sphinx_rtd_theme
sphinx-autoapi
myst_parser

[publishing]
build
twine
wheel
