.gitignore
CHANGELOG.md
CONTEXT.md
LICENSE
LIMITATIONS.md
README.md
pixi.lock
pixi.toml
pyproject.toml
.github/workflows/publish.yml
benchmarks/.gitignore
benchmarks/profile_pedigree_graph.py
docs/architecture.md
docs/code-quality-review.md
docs/adr/0001-dp-kinship-bench-split-rejected.md
docs/adr/0002-pair-engines-read-only-collaborators.md
docs/adr/0003-relationship-plan-documents-not-drives-engines.md
docs/adr/0004-registry-aligned-max-degree-semantics.md
docs/adr/0005-exact-on-demand-pairwise-kinship.md
docs/code-quality-review/README.md
docs/code-quality-review/pgq-001-fix-pair-coordinate-space-mismatch-after-from-subsample.md
docs/code-quality-review/pgq-002-replace-loose-constructor-inputs-and-dense-id-remapping-with-a-validated-input-model.md
docs/code-quality-review/pgq-003-decompose-pedigreegraph-move-relationship-engines-out-of-core-py.md
docs/code-quality-review/pgq-004-make-relationship-extraction-semantics-a-single-explicit-plan-instead-of-duplicated-degree-branches.md
docs/code-quality-review/pgq-005-replace-stringly-typed-effective-size-payload-dicts-with-explicit-typed-models.md
docs/code-quality-review/pgq-006-split-effective-size-py-into-focused-estimator-modules.md
docs/code-quality-review/pgq-007-simplify-or-fully-support-assemble-csc-s-extra-contract.md
docs/code-quality-review/pgq-008-decompose-kinship-kernel-py-and-shrink-dp-kinship-s-state-machine.md
docs/code-quality-review/pgq-009-reassess-the-experimental-bfs-engine-after-core-relationship-semantics-are-centralized.md
docs/code-quality-review/pgq-010-add-architecture-guardrails-for-large-files-and-hidden-coordinate-type-contracts.md
pedigree_graph/__init__.py
pedigree_graph/_bfs_engine.py
pedigree_graph/_bfs_kernel.py
pedigree_graph/_cohort_utils.py
pedigree_graph/_core.py
pedigree_graph/_effective_size.py
pedigree_graph/_frames.py
pedigree_graph/_inbreeding_kernel.py
pedigree_graph/_kinship_allocator.py
pedigree_graph/_kinship_csc.py
pedigree_graph/_kinship_depth.py
pedigree_graph/_kinship_dp.py
pedigree_graph/_kinship_kernel.py
pedigree_graph/_kinship_pairwise.py
pedigree_graph/_lineage_kernel.py
pedigree_graph/_ne_caballero_toro.py
pedigree_graph/_ne_common.py
pedigree_graph/_ne_family_size.py
pedigree_graph/_ne_founders.py
pedigree_graph/_ne_hill.py
pedigree_graph/_ne_rates.py
pedigree_graph/_ne_results.py
pedigree_graph/_pair_extractor.py
pedigree_graph/_pair_utils.py
pedigree_graph/_registry.py
pedigree_graph/_streaming_counter.py
pedigree_graph/experimental.py
pedigree_graph/py.typed
pedigree_graph.egg-info/PKG-INFO
pedigree_graph.egg-info/SOURCES.txt
pedigree_graph.egg-info/dependency_links.txt
pedigree_graph.egg-info/requires.txt
pedigree_graph.egg-info/scm_file_list.json
pedigree_graph.egg-info/scm_version.json
pedigree_graph.egg-info/top_level.txt
tests/conftest.py
tests/test_architecture_guardrails.py
tests/test_bfs_kernel.py
tests/test_cohort_utils.py
tests/test_count_pairs_streaming.py
tests/test_effective_size.py
tests/test_effective_size_scaling.py
tests/test_experimental.py
tests/test_frame_inputs.py
tests/test_from_arrays_sex.py
tests/test_inbreeding_kernel.py
tests/test_inbreeding_properties.py
tests/test_kinship_kernel.py
tests/test_kinship_properties.py
tests/test_n_ancestors.py
tests/test_n_descendants.py
tests/test_ne_common_properties.py
tests/test_ne_properties.py
tests/test_pair_engines.py
tests/test_pair_engines_properties.py
tests/test_pair_extraction_properties.py
tests/test_pair_kinship_registry_properties.py
tests/test_pair_utils_properties.py
tests/test_pedigree_graph.py
tests/test_relationship_plan.py
tests/data/small_pedigree.parquet