girder-client
numpy
pydantic>=2.0
requests
shapely
scikit-image
urllib3

[dev]
pytest
pytest-mock
tifffile
nimbusimage[xenium]

[docs]
mkdocs
mkdocs-material
mkdocstrings[python]

[worker]
large-image

[xenium]
zarr
numcodecs
tifffile
scipy
anndata<0.14
pandas

[xenium-umap]
nimbusimage[xenium]
scikit-learn
umap-learn
