anndata>=0.9
matplotlib>=3.6
numba>=0.57
numpy>=1.22
pandas>=1.5
POT==0.9.5
PyYAML>=6.0
scanpy>=1.9
statsmodels>=0.14.1
scikit-image>=0.20
scikit-learn>=1.2
scipy>=1.9
seaborn>=0.12
squidpy>=1.2
tqdm>=4.64
igraph
leidenalg
scikit-misc
gseapy

[annotation]
tacco>=0.2

[dev]
black
ruff
pytest
pytest-cov

[spatialdata]

[spatialdata:python_version >= "3.10"]
numpy<2.3,>=2
pims>=0.7
setuptools<81
spatialdata<0.6,>=0.5
spatialdata-io<0.4,>=0.3
