Bijux Tree Comparison Report
comparison-metrics
{
"left_informative_clades": 7,
"left_only_taxa": [],
"left_path": "rabies-cross-host-geography-panel.rooted.tree",
"left_unrooted_splits": 6,
"normalized_robinson_foulds": 0.07692307692307693,
"rf_mode": "rooted",
"right_informative_clades": 6,
"right_only_taxa": [],
"right_path": "bootstrap-review/bootstrap-review.consensus.nwk",
"right_unrooted_splits": 6,
"robinson_foulds_distance": 1,
"rooted_normalized_robinson_foulds": 0.07692307692307693,
"rooted_robinson_foulds_distance": 1,
"same_taxa_different_rooting": true,
"same_topology_different_branch_lengths": false,
"same_unrooted_topology": true,
"shared_taxa": [
"bat_chile_rv108",
"bat_chile_rv50",
"cattle_russia_4092_13_2025",
"cattle_russia_4092_15_2025",
"dog_pakistan_pdb011",
"raccoon_dog_poland_2021",
"raccoon_dog_russia_4092_26_2025",
"red_fox_russia_4092_18_2025",
"red_fox_russia_4092_20_2025"
],
"taxon_overlap_policy": "prune-to-shared",
"topology_equal": false,
"unrooted_normalized_robinson_foulds": 0.0,
"unrooted_robinson_foulds_distance": 0
}
clade-comparison
{
"clade_rows": [
{
"absent_tree_count": 0,
"clade_id": "cattle_russia_4092_13_2025|cattle_russia_4092_15_2025",
"observations": [
{
"present": true,
"support": 100.0,
"tree_path": "rabies-cross-host-geography-panel.rooted.tree"
},
{
"present": true,
"support": 100.0,
"tree_path": "bootstrap-review/bootstrap-review.consensus.nwk"
}
],
"present_in_all_trees": true,
"present_tree_count": 2
},
{
"absent_tree_count": 0,
"clade_id": "raccoon_dog_russia_4092_26_2025|red_fox_russia_4092_20_2025",
"observations": [
{
"present": true,
"support": 84.0,
"tree_path": "rabies-cross-host-geography-panel.rooted.tree"
},
{
"present": true,
"support": 84.4,
"tree_path": "bootstrap-review/bootstrap-review.consensus.nwk"
}
],
"present_in_all_trees": true,
"present_tree_count": 2
},
{
"absent_tree_count": 0,
"clade_id": "raccoon_dog_russia_4092_26_2025|red_fox_russia_4092_18_2025|red_fox_russia_4092_20_2025",
"observations": [
{
"present": true,
"support": 92.0,
"tree_path": "rabies-cross-host-geography-panel.rooted.tree"
},
{
"present": true,
"support": 92.2,
"tree_path": "bootstrap-review/bootstrap-review.consensus.nwk"
}
],
"present_in_all_trees": true,
"present_tree_count": 2
},
{
"absent_tree_count": 0,
"clade_id": "cattle_russia_4092_13_2025|cattle_russia_4092_15_2025|raccoon_dog_russia_4092_26_2025|red_fox_russia_4092_18_2025|red_fox_russia_4092_20_2025",
"observations": [
{
"present": true,
"support": 99.0,
"tree_path": "rabies-cross-host-geography-panel.rooted.tree"
},
{
"present": true,
"support": 99.0,
"tree_path": "bootstrap-review/bootstrap-review.consensus.nwk"
}
],
"present_in_all_trees": true,
"present_tree_count": 2
},
{
"absent_tree_count": 0,
"clade_id": "cattle_russia_4092_13_2025|cattle_russia_4092_15_2025|raccoon_dog_poland_2021|raccoon_dog_russia_4092_26_2025|red_fox_russia_4092_18_2025|red_fox_russia_4092_20_2025",
"observations": [
{
"present": true,
"support": 100.0,
"tree_path": "rabies-cross-host-geography-panel.rooted.tree"
},
{
"present": true,
"support": 99.9,
"tree_path": "bootstrap-review/bootstrap-review.consensus.nwk"
}
],
"present_in_all_trees": true,
"present_tree_count": 2
},
{
"absent_tree_count": 0,
"clade_id": "cattle_russia_4092_13_2025|cattle_russia_4092_15_2025|dog_pakistan_pdb011|raccoon_dog_poland_2021|raccoon_dog_russia_4092_26_2025|red_fox_russia_4092_18_2025|red_fox_russia_4092_20_2025",
"observations": [
{
"present": true,
"support": 100.0,
"tree_path": "rabies-cross-host-geography-panel.rooted.tree"
},
{
"present": true,
"support": 100.0,
"tree_path": "bootstrap-review/bootstrap-review.consensus.nwk"
}
],
"present_in_all_trees": true,
"present_tree_count": 2
},
{
"absent_tree_count": 1,
"clade_id": "bat_chile_rv50|cattle_russia_4092_13_2025|cattle_russia_4092_15_2025|dog_pakistan_pdb011|raccoon_dog_poland_2021|raccoon_dog_russia_4092_26_2025|red_fox_russia_4092_18_2025|red_fox_russia_4092_20_2025",
"observations": [
{
"present": true,
"support": null,
"tree_path": "rabies-cross-host-geography-panel.rooted.tree"
},
{
"present": false,
"support": null,
"tree_path": "bootstrap-review/bootstrap-review.consensus.nwk"
}
],
"present_in_all_trees": false,
"present_tree_count": 1
}
],
"conflicting_clades": [
"bat_chile_rv50|cattle_russia_4092_13_2025|cattle_russia_4092_15_2025|dog_pakistan_pdb011|raccoon_dog_poland_2021|raccoon_dog_russia_4092_26_2025|red_fox_russia_4092_18_2025|red_fox_russia_4092_20_2025"
],
"shared_clades": [
"cattle_russia_4092_13_2025|cattle_russia_4092_15_2025",
"raccoon_dog_russia_4092_26_2025|red_fox_russia_4092_20_2025",
"raccoon_dog_russia_4092_26_2025|red_fox_russia_4092_18_2025|red_fox_russia_4092_20_2025",
"cattle_russia_4092_13_2025|cattle_russia_4092_15_2025|raccoon_dog_russia_4092_26_2025|red_fox_russia_4092_18_2025|red_fox_russia_4092_20_2025",
"cattle_russia_4092_13_2025|cattle_russia_4092_15_2025|raccoon_dog_poland_2021|raccoon_dog_russia_4092_26_2025|red_fox_russia_4092_18_2025|red_fox_russia_4092_20_2025",
"cattle_russia_4092_13_2025|cattle_russia_4092_15_2025|dog_pakistan_pdb011|raccoon_dog_poland_2021|raccoon_dog_russia_4092_26_2025|red_fox_russia_4092_18_2025|red_fox_russia_4092_20_2025"
],
"shared_taxa": [
"bat_chile_rv108",
"bat_chile_rv50",
"cattle_russia_4092_13_2025",
"cattle_russia_4092_15_2025",
"dog_pakistan_pdb011",
"raccoon_dog_poland_2021",
"raccoon_dog_russia_4092_26_2025",
"red_fox_russia_4092_18_2025",
"red_fox_russia_4092_20_2025"
],
"tree_paths": [
"rabies-cross-host-geography-panel.rooted.tree",
"bootstrap-review/bootstrap-review.consensus.nwk"
],
"tree_summaries": [
{
"clade_count": 7,
"excluded_taxa": [],
"support_clade_count": 6,
"tree_path": "rabies-cross-host-geography-panel.rooted.tree",
"unique_clades": [
"bat_chile_rv50|cattle_russia_4092_13_2025|cattle_russia_4092_15_2025|dog_pakistan_pdb011|raccoon_dog_poland_2021|raccoon_dog_russia_4092_26_2025|red_fox_russia_4092_18_2025|red_fox_russia_4092_20_2025"
]
},
{
"clade_count": 6,
"excluded_taxa": [],
"support_clade_count": 6,
"tree_path": "bootstrap-review/bootstrap-review.consensus.nwk",
"unique_clades": []
}
]
}
clade-changes
{
"gained_clades": [],
"left_path": "rabies-cross-host-geography-panel.rooted.tree",
"lost_clades": [
"bat_chile_rv50|cattle_russia_4092_13_2025|cattle_russia_4092_15_2025|dog_pakistan_pdb011|raccoon_dog_poland_2021|raccoon_dog_russia_4092_26_2025|red_fox_russia_4092_18_2025|red_fox_russia_4092_20_2025"
],
"right_path": "bootstrap-review/bootstrap-review.consensus.nwk"
}
support-comparison
{
"conflicting_clades": [
{
"comparison_status": "left_only",
"conflict_classification": "support_unavailable",
"detail": "clade conflict could not be ranked because no branch support was available",
"left_present": true,
"left_support": null,
"left_support_fraction": null,
"right_present": false,
"right_support": null,
"right_support_fraction": null,
"split_id": "bat_chile_rv50|cattle_russia_4092_13_2025|cattle_russia_4092_15_2025|dog_pakistan_pdb011|raccoon_dog_poland_2021|raccoon_dog_russia_4092_26_2025|red_fox_russia_4092_18_2025|red_fox_russia_4092_20_2025",
"strongest_support_fraction": null,
"support_strength": "unavailable"
}
],
"left_path": "rabies-cross-host-geography-panel.rooted.tree",
"right_path": "bootstrap-review/bootstrap-review.consensus.nwk",
"shared_clades": [
{
"left_support": 100.0,
"left_support_fraction": 1.0,
"right_support": 100.0,
"right_support_fraction": 1.0,
"split_id": "cattle_russia_4092_13_2025|cattle_russia_4092_15_2025",
"support_disagreement": false,
"support_fraction_delta": 0.0
},
{
"left_support": 100.0,
"left_support_fraction": 1.0,
"right_support": 100.0,
"right_support_fraction": 1.0,
"split_id": "cattle_russia_4092_13_2025|cattle_russia_4092_15_2025|dog_pakistan_pdb011|raccoon_dog_poland_2021|raccoon_dog_russia_4092_26_2025|red_fox_russia_4092_18_2025|red_fox_russia_4092_20_2025",
"support_disagreement": false,
"support_fraction_delta": 0.0
},
{
"left_support": 100.0,
"left_support_fraction": 1.0,
"right_support": 99.9,
"right_support_fraction": 0.9990000000000001,
"split_id": "cattle_russia_4092_13_2025|cattle_russia_4092_15_2025|raccoon_dog_poland_2021|raccoon_dog_russia_4092_26_2025|red_fox_russia_4092_18_2025|red_fox_russia_4092_20_2025",
"support_disagreement": false,
"support_fraction_delta": 0.0009999999999998899
},
{
"left_support": 99.0,
"left_support_fraction": 0.99,
"right_support": 99.0,
"right_support_fraction": 0.99,
"split_id": "cattle_russia_4092_13_2025|cattle_russia_4092_15_2025|raccoon_dog_russia_4092_26_2025|red_fox_russia_4092_18_2025|red_fox_russia_4092_20_2025",
"support_disagreement": false,
"support_fraction_delta": 0.0
},
{
"left_support": 92.0,
"left_support_fraction": 0.92,
"right_support": 92.2,
"right_support_fraction": 0.922,
"split_id": "raccoon_dog_russia_4092_26_2025|red_fox_russia_4092_18_2025|red_fox_russia_4092_20_2025",
"support_disagreement": false,
"support_fraction_delta": 0.0020000000000000018
},
{
"left_support": 84.0,
"left_support_fraction": 0.84,
"right_support": 84.4,
"right_support_fraction": 0.8440000000000001,
"split_id": "raccoon_dog_russia_4092_26_2025|red_fox_russia_4092_20_2025",
"support_disagreement": false,
"support_fraction_delta": 0.004000000000000115
}
],
"shared_taxa": [
"bat_chile_rv108",
"bat_chile_rv50",
"cattle_russia_4092_13_2025",
"cattle_russia_4092_15_2025",
"dog_pakistan_pdb011",
"raccoon_dog_poland_2021",
"raccoon_dog_russia_4092_26_2025",
"red_fox_russia_4092_18_2025",
"red_fox_russia_4092_20_2025"
],
"strong_support_threshold": 0.9,
"support_disagreement_threshold": 0.15,
"weak_support_threshold": 0.7
}
support-conflicts
[
{
"comparison_status": "left_only",
"conflict_classification": "support_unavailable",
"detail": "clade conflict could not be ranked because no branch support was available",
"left_present": true,
"left_support": null,
"left_support_fraction": null,
"right_present": false,
"right_support": null,
"right_support_fraction": null,
"split_id": "bat_chile_rv50|cattle_russia_4092_13_2025|cattle_russia_4092_15_2025|dog_pakistan_pdb011|raccoon_dog_poland_2021|raccoon_dog_russia_4092_26_2025|red_fox_russia_4092_18_2025|red_fox_russia_4092_20_2025",
"strongest_support_fraction": null,
"support_strength": "unavailable"
}
]
branch-length-comparison
{
"branch_score": {
"branch_score_distance": null,
"left_only_split_count": 0,
"left_only_taxa": [],
"left_path": "rabies-cross-host-geography-panel.rooted.tree",
"missing_length_split_count": 15,
"right_only_split_count": 0,
"right_only_taxa": [],
"right_path": "bootstrap-review/bootstrap-review.consensus.nwk",
"same_taxon_set": true,
"shared_split_count": 15,
"shared_taxa": [
"bat_chile_rv108",
"bat_chile_rv50",
"cattle_russia_4092_13_2025",
"cattle_russia_4092_15_2025",
"dog_pakistan_pdb011",
"raccoon_dog_poland_2021",
"raccoon_dog_russia_4092_26_2025",
"red_fox_russia_4092_18_2025",
"red_fox_russia_4092_20_2025"
],
"split_count": 15,
"splits": [
{
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"left_length": 0.0550352189,
"right_length": null,
"split_id": "bat_chile_rv108",
"squared_difference": null
},
{
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"left_length": 0.035975039,
"right_length": null,
"split_id": "bat_chile_rv50",
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},
{
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},
{
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"comparison_status": "shared",
"left_length": 1e-06,
"right_length": null,
"split_id": "cattle_russia_4092_15_2025",
"squared_difference": null
},
{
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"left_length": 0.0944972697,
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"split_id": "dog_pakistan_pdb011",
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},
{
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"split_id": "raccoon_dog_poland_2021",
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},
{
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},
{
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},
{
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},
{
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"comparison_status": "shared",
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"split_id": "bat_chile_rv108|bat_chile_rv50",
"squared_difference": null
},
{
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"comparison_status": "shared",
"left_length": 0.0170069874,
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"split_id": "cattle_russia_4092_13_2025|cattle_russia_4092_15_2025",
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},
{
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"left_length": 0.0024457758,
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"split_id": "raccoon_dog_russia_4092_26_2025|red_fox_russia_4092_20_2025",
"squared_difference": null
},
{
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"comparison_status": "shared",
"left_length": 0.0631040468,
"right_length": null,
"split_id": "bat_chile_rv108|bat_chile_rv50|dog_pakistan_pdb011",
"squared_difference": null
},
{
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"comparison_status": "shared",
"left_length": 0.0078975386,
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"split_id": "raccoon_dog_russia_4092_26_2025|red_fox_russia_4092_18_2025|red_fox_russia_4092_20_2025",
"squared_difference": null
},
{
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}
],
"taxon_overlap_policy": "prune-to-shared"
},
"left_only_taxa": [],
"left_path": "rabies-cross-host-geography-panel.rooted.tree",
"right_only_taxa": [],
"right_path": "bootstrap-review/bootstrap-review.consensus.nwk",
"same_taxon_set": true,
"shared_splits": [
{
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"ratio": null,
"right_length": null,
"split_id": "cattle_russia_4092_13_2025|cattle_russia_4092_15_2025"
},
{
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"ratio": null,
"right_length": null,
"split_id": "cattle_russia_4092_13_2025|cattle_russia_4092_15_2025|dog_pakistan_pdb011|raccoon_dog_poland_2021|raccoon_dog_russia_4092_26_2025|red_fox_russia_4092_18_2025|red_fox_russia_4092_20_2025"
},
{
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"split_id": "cattle_russia_4092_13_2025|cattle_russia_4092_15_2025|raccoon_dog_poland_2021|raccoon_dog_russia_4092_26_2025|red_fox_russia_4092_18_2025|red_fox_russia_4092_20_2025"
},
{
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"split_id": "cattle_russia_4092_13_2025|cattle_russia_4092_15_2025|raccoon_dog_russia_4092_26_2025|red_fox_russia_4092_18_2025|red_fox_russia_4092_20_2025"
},
{
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"split_id": "raccoon_dog_russia_4092_26_2025|red_fox_russia_4092_18_2025|red_fox_russia_4092_20_2025"
},
{
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"split_id": "raccoon_dog_russia_4092_26_2025|red_fox_russia_4092_20_2025"
}
],
"shared_taxa": [
"bat_chile_rv108",
"bat_chile_rv50",
"cattle_russia_4092_13_2025",
"cattle_russia_4092_15_2025",
"dog_pakistan_pdb011",
"raccoon_dog_poland_2021",
"raccoon_dog_russia_4092_26_2025",
"red_fox_russia_4092_18_2025",
"red_fox_russia_4092_20_2025"
],
"taxon_overlap_policy": "prune-to-shared"
}
input-checksums
{
"bootstrap-review/bootstrap-review.consensus.nwk": "a5262e93ad62941fdef212ed24578c9ec87f97fe51d75448a73f1b4b75cd9d79",
"rabies-cross-host-geography-panel.rooted.tree": "42433d0fe28a86106c4a3bb963fb88f54c8dcdeaff0b92b8a3d10ca9da253196"
}