AGENTS.md
CONTRIBUTING.md
GALLERY_STYLE_GUIDE.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.cfg
SFI/__init__.py
SFI/bases/__init__.py
SFI/bases/constants.py
SFI/bases/linear.py
SFI/bases/monomials.py
SFI/bases/pairs.py
SFI/bases/spde.py
SFI/diagnostics/__init__.py
SFI/diagnostics/assess.py
SFI/diagnostics/dynamics_order.py
SFI/diagnostics/plotting.py
SFI/diagnostics/report.py
SFI/diagnostics/residual_tests.py
SFI/diagnostics/residuals.py
SFI/inference/__init__.py
SFI/inference/base.py
SFI/inference/optimizers.py
SFI/inference/overdamped.py
SFI/inference/result.py
SFI/inference/serialization.py
SFI/inference/sparsity.py
SFI/inference/underdamped.py
SFI/inference/parametric_core/__init__.py
SFI/inference/parametric_core/covariance.py
SFI/inference/parametric_core/driver.py
SFI/inference/parametric_core/flow.py
SFI/inference/parametric_core/flow_multi.py
SFI/inference/parametric_core/flow_ud.py
SFI/inference/parametric_core/jacobians.py
SFI/inference/parametric_core/objective.py
SFI/inference/parametric_core/objective_ud.py
SFI/inference/parametric_core/precision.py
SFI/inference/parametric_core/solve.py
SFI/inference/sparse/__init__.py
SFI/inference/sparse/base.py
SFI/inference/sparse/beam.py
SFI/inference/sparse/greedy.py
SFI/inference/sparse/hillclimb.py
SFI/inference/sparse/lasso.py
SFI/inference/sparse/metrics.py
SFI/inference/sparse/result.py
SFI/inference/sparse/scorer.py
SFI/inference/sparse/stlsq.py
SFI/integrate/__init__.py
SFI/integrate/api.py
SFI/integrate/integrand.py
SFI/integrate/rk4.py
SFI/integrate/timeops.py
SFI/langevin/__init__.py
SFI/langevin/base.py
SFI/langevin/chunked.py
SFI/langevin/noise.py
SFI/langevin/overdamped.py
SFI/langevin/underdamped.py
SFI/statefunc/__init__.py
SFI/statefunc/basis.py
SFI/statefunc/factory.py
SFI/statefunc/interactor.py
SFI/statefunc/memhint.py
SFI/statefunc/params.py
SFI/statefunc/psf.py
SFI/statefunc/sf.py
SFI/statefunc/stateexpr.py
SFI/statefunc/structexpr.py
SFI/statefunc/core/runtime.py
SFI/statefunc/layout/__init__.py
SFI/statefunc/layout/_base.py
SFI/statefunc/layout/_eval_compiler.py
SFI/statefunc/layout/_fd_atoms.py
SFI/statefunc/layout/_grid.py
SFI/statefunc/layout/_sectors.py
SFI/statefunc/nodes/__init__.py
SFI/statefunc/nodes/base.py
SFI/statefunc/nodes/contract.py
SFI/statefunc/nodes/leaf.py
SFI/statefunc/nodes/interactions/__init__.py
SFI/statefunc/nodes/interactions/dispatcher.py
SFI/statefunc/nodes/interactions/prepare.py
SFI/statefunc/nodes/interactions/specs.py
SFI/statefunc/nodes/interactions/stencils.py
SFI/statefunc/nodes/ops/__init__.py
SFI/statefunc/nodes/ops/concat.py
SFI/statefunc/nodes/ops/derivative.py
SFI/statefunc/nodes/ops/einsum.py
SFI/statefunc/nodes/ops/linear.py
SFI/statefunc/nodes/ops/mapn.py
SFI/statefunc/nodes/ops/reshape_rank.py
SFI/statefunc/nodes/ops/slice.py
SFI/trajectory/__init__.py
SFI/trajectory/collection.py
SFI/trajectory/dataset.py
SFI/trajectory/degrade.py
SFI/trajectory/io.py
SFI/trajectory/reserved_extras.py
SFI/utils/__init__.py
SFI/utils/formatting.py
SFI/utils/maths.py
SFI/utils/neighbors.py
SFI/utils/plotting.py
StochasticForceInference.egg-info/PKG-INFO
StochasticForceInference.egg-info/SOURCES.txt
StochasticForceInference.egg-info/dependency_links.txt
StochasticForceInference.egg-info/requires.txt
StochasticForceInference.egg-info/top_level.txt
examples/convert_active_nematic_mat.py
examples/_gallery_utils/__init__.py
examples/_gallery_utils/abp.py
examples/_gallery_utils/coarse_grain.py
examples/_gallery_utils/helpers.py
examples/_gallery_utils/scenario_picker.py
examples/experimental_data/_analyze_results.py
examples/experimental_data/_expanded_basis.py
examples/experimental_data/generate_tweezer_csv.py
examples/gallery/abp_align_demo.py
examples/gallery/abp_nonreciprocal_demo.py
examples/gallery/abp_to_spde_demo.py
examples/gallery/active_nematic_demo.py
examples/gallery/anisotropic_diffusion_demo.py
examples/gallery/custom_basis_demo.py
examples/gallery/diagnostics_demo.py
examples/gallery/dynamics_order_demo.py
examples/gallery/experimental_workflow_demo.py
examples/gallery/gray_scott_demo.py
examples/gallery/home_range_demo.py
examples/gallery/limitcycle_demo.py
examples/gallery/lorenz_demo.py
examples/gallery/lotka_volterra_demo.py
examples/gallery/multiplicative_diffusion_demo.py
examples/gallery/ou_demo.py
examples/gallery/time_dependent_forcing_demo.py
examples/gallery/time_fourier_demo.py
examples/gallery/van_der_pol_demo.py
examples/gallery/velocity_dependent_noise_demo.py
examples/gallery/advanced/flocking_3d_demo.py
examples/gallery/advanced/multi_experiment_demo.py
examples/gallery/advanced/nn_force_demo.py
examples/manual_examples/abp_align_demo.py
examples/manual_examples/abp_largescale_config.py
examples/manual_examples/abp_largescale_demo.py
examples/manual_examples/abp_largescale_infer.py
examples/manual_examples/abp_largescale_plot.py
examples/manual_examples/abp_largescale_simulate.py
examples/manual_examples/abp_pursuit_demo.py
tests/test_dual_mask.py
tests/test_parametric_mask.py
tests/test_parametric_mask_abp.py
tests/test_same_particle_jacobian.py