*.rec
output
tmp/
**/__pycache__/
*.txt
job_out/
*.txt
*.tmp
*.temp
temp/
*.csv
*.bak
*.out
*@bk*
*bk@*
*bak@*
*.rhd
*.7z
.idea/
dist/
build/
*.log
logs/
log/
*.nwb
*.csv
*.mat
sub_repos/
*.egg-info/
.pytest_cache/
.idea/
.venv/
.vscode/
.snakemake/
.ruff_cache/
.qoder/

# Local Agent / IDE-assistant state (per-machine, not for the repo)
.claude/
.opencode/
.cursor/
.cursorrules
.aider*
.aider.conf.yml
.codeium/
.windsurf/
.continue/
.kiro/
.trae/
.gemini/
.roo/
.cline/
.zed/
.omo/
.codex/
.copilot/
AGENTS.md
CLAUDE.md
.opencode.json
.omo