LICENSE
README.md
pyproject.toml
jasentool/__init__.py
jasentool/__main__.py
jasentool/__version__.py
jasentool/annotate_delly.py
jasentool/bigsdb.py
jasentool/check_backup.py
jasentool/cli.py
jasentool/compare_distances.py
jasentool/concatenate.py
jasentool/config.py
jasentool/converge.py
jasentool/convert.py
jasentool/count_reads.py
jasentool/create_blacklist.py
jasentool/create_yaml.py
jasentool/database.py
jasentool/fix.py
jasentool/fohm.py
jasentool/format_cdm.py
jasentool/genome.py
jasentool/log.py
jasentool/main.py
jasentool/matrix.py
jasentool/minority_report.py
jasentool/missing.py
jasentool/ncbi.py
jasentool/plot.py
jasentool/qc.py
jasentool/rebuild_manifests.py
jasentool/rerun_chewbbaca.py
jasentool/sample_utils.py
jasentool/tbprofiler.py
jasentool/utils.py
jasentool/validate.py
jasentool/who.py
jasentool.egg-info/PKG-INFO
jasentool.egg-info/SOURCES.txt
jasentool.egg-info/dependency_links.txt
jasentool.egg-info/entry_points.txt
jasentool.egg-info/requires.txt
jasentool.egg-info/top_level.txt
jasentool/cdm/__init__.py
jasentool/cdm/base.py
jasentool/cdm/exceptions.py
jasentool/cdm/export.py
jasentool/cdm/io_manifest.py
jasentool/cdm/loader.py
jasentool/cdm/manifest.py
jasentool/cdm/metadata.py
jasentool/cdm/types.py
jasentool/cdm/core/__init__.py
jasentool/cdm/core/base.py
jasentool/cdm/core/envelope.py
jasentool/cdm/core/registry.py
jasentool/cdm/io/__init__.py
jasentool/cdm/io/delimited.py
jasentool/cdm/io/json.py
jasentool/cdm/io/types.py
jasentool/cdm/io/utils.py
jasentool/cdm/models/__init__.py
jasentool/cdm/models/base.py
jasentool/cdm/models/enums.py
jasentool/cdm/models/qc.py
jasentool/cdm/models/typing.py
jasentool/cdm/parsers/__init__.py
jasentool/cdm/parsers/chewbacca.py
jasentool/cdm/parsers/gambit.py
jasentool/cdm/parsers/post_align_qc.py
jasentool/cdm/parsers/quast.py
jasentool/cdm/parsers/utils.py
jasentool/data/dbs/fohm.csv
notebooks/saureus_notebooks.ipynb
notebooks/tb_validation.ipynb
tests/test_cli.py
tests/test_config.py
tests/test_create_yaml_databases.py
tests/test_rebuild_manifests.py