numpy
magicgui
qtpy
scikit-image
spatialdata>=0.5.0
imagecodecs
napari[all]
napari_matplotlib>=3.0.0
napari_spatialdata>=0.5.7
dask<2024.11.12
matplotlib
PyComplexHeatmap
scikit-learn
cellpose>=3.0.10
scanpy>=1.10.0
harmonypy
phenograph
squidpy
kneed
xarray
pyometiff
forestplot
scikit-survival
spatialdata-plot>=0.2.11
requests

[docs]
ipykernel
ipython
myst-nb>=1.1
myst-parser
sphinx>=4
sphinx-autodoc-typehints
sphinx-book-theme>=1
sphinx-copybutton
sphinx-qt-documentation
sphinxcontrib-bibtex>=1
sphinx-tabs
sphinxext-opengraph

[gpu]
dask-cudf-cu12==24.10.*
rapids-singlecell[rapids12]

[testing]
tox
pytest
pytest-lazy-fixtures
pytest-cov
pytest-qt
napari
qtpy
