Metadata-Version: 2.4
Name: naapam
Version: 0.1.12
Summary: Chip-based CRISPR analysis
Author-Email: ljw <ljw2017@sjtu.edu.cn>
License-Expression: MIT
License-File: LICENSE.md
Requires-Python: >=3.13
Requires-Dist: biopython>=1.86
Requires-Dist: pandas[feather]>=3.0.0
Requires-Dist: plotnine>=0.15.2
Requires-Dist: pysam>=0.23.3
Requires-Dist: pyyaml>=6.0.3
Requires-Dist: statsmodels>=0.14.6
Provides-Extra: dev
Requires-Dist: cibuildwheel>=3.3.1; extra == "dev"
Description-Content-Type: text/markdown

# TODO

- [ ] 仔细调整max_freq_temN
- [ ] 实在不行，保底拟合矫正del长度
- [ ] 利用可视化技术精确定位不好的reads
- [ ] mermaid diagram README for workflow

# Package

- [ ] format jupyter-notebook
- [ ] github action

# Dependencies

- bowtie2
- gawk
