INSTALL.md
LICENSE
MANIFEST.in
README.md
__init__.py
mkdocs.yml
pyproject.toml
requirements-dev.txt
requirements-test.txt
requirements.txt
setup.py
.github/workflows/mkdocs.yml
crisgi/__init__.py
crisgi/_version.py
crisgi/crisgi.py
crisgi/plotting.py
crisgi/plotting_crisgi_time.py
crisgi/startpoint_detection.py
crisgi/stringdb_human_v12_gb_net.pk
crisgi/stringdb_human_v12_genes.pk
crisgi/stringdb_mouse_v12_gb_net.pk
crisgi/stringdb_mouse_v12_genes.pk
crisgi/util.py
crisgi.egg-info/PKG-INFO
crisgi.egg-info/SOURCES.txt
crisgi.egg-info/dependency_links.txt
crisgi.egg-info/requires.txt
crisgi.egg-info/top_level.txt
crisgi/cnn/CNNModel.py
crisgi/cnn/__init__.py
crisgi/cnn/autoEncoder.py
crisgi/cnn/evalution_metrics.py
crisgi/cnn/mlp.py
crisgi/cnn/train.py
crisgi/logistic/LogisticModel.py
crisgi/logistic/__init__.py
crisgi/logistic/evalution_metrics.py
crisgi/logistic/train.py
crisgi/simplecnn/SimpleCNNModel.py
crisgi/simplecnn/__init__.py
crisgi/simplecnn/autoEncoder.py
crisgi/simplecnn/evalution_metrics.py
crisgi/simplecnn/mlp.py
crisgi/simplecnn/train.py
docs/api_reference.md
docs/index.md
docs/installation.md
docs/tutorial.md
docs/api/calculate_entropy.md
docs/api/check_common_diff.md
docs/api/cohort_level_top_n_ORA.md
docs/api/crisgi_init.md
docs/api/crisgitime_init.md
docs/api/detect_startpoint.md
docs/api/find_interaction_module.md
docs/api/get_DER.md
docs/api/init.md
docs/api/init_edata.md
docs/api/load_crisgi.md
docs/api/network_analysis.md
docs/api/obs_level_CT_rank.md
docs/api/pheno_level_CT_rank.md
docs/api/pheno_level_accumulated_top_n_ORA.md
docs/api/pl.interaction_score_line.md
docs/api/pl.pheno_level_accumulated_top_n_ORA.md
docs/api/save.md
docs/api/survival_analysis.md
docs/api/test_DER.md
docs/api/test_TER.md
docs/api/test_val_trend_entropy.md
docs/api/train_predict.md
docs/css/custom.css
docs/figure/Figure1.png
docs/js/sort-init.js
docs/js/tablesort.min.js
docs/tutorial/gse30550.ipynb