LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
./bioconda-recipes/recipes/hap.py
./bioconda-recipes/recipes/roary2fripan.py
./bioconda-recipes/recipes/velocyto.py
./bioconda-recipes/recipes/adapterremovalfixprefix/AdapterRemovalFixPrefix.py
./bioconda-recipes/recipes/astral-tree/astral.py
./bioconda-recipes/recipes/bamr/run_test.py
./bioconda-recipes/recipes/bioconda-repodata-patches/gen_patch_json.py
./bioconda-recipes/recipes/bioconda-repodata-patches/show_diff.py
./bioconda-recipes/recipes/biopet/biopet.py
./bioconda-recipes/recipes/biopet-bamstats/biopet-bamstats.py
./bioconda-recipes/recipes/biopet-basecounter/biopet-basecounter.py
./bioconda-recipes/recipes/biopet-extractadaptersfastqc/biopet-extractadaptersfastqc.py
./bioconda-recipes/recipes/biopet-fastqsplitter/biopet-fastqsplitter.py
./bioconda-recipes/recipes/biopet-sampleconfig/biopet-sampleconfig.py
./bioconda-recipes/recipes/biopet-scatterregions/biopet-scatterregions.py
./bioconda-recipes/recipes/biopet-seattleseqkit/biopet-seattleseqkit.py
./bioconda-recipes/recipes/biopet-seqstat/biopet-seqstat.py
./bioconda-recipes/recipes/biopet-validateannotation/biopet-validateannotation.py
./bioconda-recipes/recipes/biopet-validatefastq/biopet-validatefastq.py
./bioconda-recipes/recipes/biopet-validatevcf/biopet-validatevcf.py
./bioconda-recipes/recipes/biopet-vcffilter/biopet-vcffilter.py
./bioconda-recipes/recipes/biopet-vcfstats/biopet-vcfstats.py
./bioconda-recipes/recipes/biotransformer/biotransformer.py
./bioconda-recipes/recipes/calitas/calitas.py
./bioconda-recipes/recipes/cgview/cgview.py
./bioconda-recipes/recipes/cialign/run_test.py
./bioconda-recipes/recipes/circularmapper/circulargenerator.py
./bioconda-recipes/recipes/circularmapper/realignsamfile.py
./bioconda-recipes/recipes/clinod/clinod.py
./bioconda-recipes/recipes/clipandmerge/clipandmerge.py
./bioconda-recipes/recipes/cliquesnv/cliquesnv.py
./bioconda-recipes/recipes/clove/clove.py
./bioconda-recipes/recipes/coot-headless/run_test.py
./bioconda-recipes/recipes/crisper_recognition_tool/crt.py
./bioconda-recipes/recipes/cvbio/cvbio.py
./bioconda-recipes/recipes/damageprofiler/damageprofiler.py
./bioconda-recipes/recipes/dedup/dedup.py
./bioconda-recipes/recipes/deepvariant/dv_call_variants.py
./bioconda-recipes/recipes/deepvariant/dv_make_examples.py
./bioconda-recipes/recipes/deepvariant/dv_postprocess_variants.py
./bioconda-recipes/recipes/dfam/download-dfam.py
./bioconda-recipes/recipes/dia_umpire/dia_umpire_quant.py
./bioconda-recipes/recipes/dia_umpire/dia_umpire_se.py
./bioconda-recipes/recipes/diatracer/diatracer.py
./bioconda-recipes/recipes/dinosaur/dinosaur.py
./bioconda-recipes/recipes/effectivet3/effectivet3.py
./bioconda-recipes/recipes/ega-cryptor/ega-cryptor.py
./bioconda-recipes/recipes/ega2/ega2.py
./bioconda-recipes/recipes/embassy-phylip/fix_acd_path.py
./bioconda-recipes/recipes/embl-api-validator/embl-api-validator.py
./bioconda-recipes/recipes/emboss/fix_acd_path.py
./bioconda-recipes/recipes/ena-webin-cli/ena_webin_cli.py
./bioconda-recipes/recipes/encyclopedia/encyclopedia.py
./bioconda-recipes/recipes/examine/examine.py
./bioconda-recipes/recipes/fgbio/fgbio.py
./bioconda-recipes/recipes/fgbio-minimal/fgbio.py
./bioconda-recipes/recipes/fgsv/fgsv.py
./bioconda-recipes/recipes/figtree/figtree.py
./bioconda-recipes/recipes/fiji/hello.py
./bioconda-recipes/recipes/fseq/fseq.py
./bioconda-recipes/recipes/gametes/gametes.py
./bioconda-recipes/recipes/gatk/gatk.py
./bioconda-recipes/recipes/gemoma/GeMoMa.py
./bioconda-recipes/recipes/gfinisher/gfinisher.py
./bioconda-recipes/recipes/goenrichment/goenrichment.py
./bioconda-recipes/recipes/goslimmer/goslimmer.py
./bioconda-recipes/recipes/hap-ibd/hap-ibd.py
./bioconda-recipes/recipes/haploview/haploview.py
./bioconda-recipes/recipes/hops/MaltExtract.py
./bioconda-recipes/recipes/hops/hops.py
./bioconda-recipes/recipes/ionquant/ionquant.py
./bioconda-recipes/recipes/jasmine/jasmine.py
./bioconda-recipes/recipes/jgoslin/jgoslin.py
./bioconda-recipes/recipes/jmztab-m/jmztab-m.py
./bioconda-recipes/recipes/jvarkit-msa2vcf/msa2vcf.py
./bioconda-recipes/recipes/jvarkit-wgscoverageplotter/wgscoverageplotter.py
./bioconda-recipes/recipes/kcftools/kcftools.py
./bioconda-recipes/recipes/kinamine_y_shaker/kinamine_y_shaker.py
./bioconda-recipes/recipes/ldsc/setup.py
./bioconda-recipes/recipes/mango/run_test.py
./bioconda-recipes/recipes/maxquant/xmlcombine.py
./bioconda-recipes/recipes/mgf-formatter/mgf-formatter.py
./bioconda-recipes/recipes/mhap/mhap.py
./bioconda-recipes/recipes/mobster/mobster-to-vcf.py
./bioconda-recipes/recipes/mobster/mobster.py
./bioconda-recipes/recipes/mpa-portable/mpa-portable.py
./bioconda-recipes/recipes/mpa-server/mpa-server.py
./bioconda-recipes/recipes/msfragger/msfragger.py
./bioconda-recipes/recipes/msgf_plus/msgf_plus.py
./bioconda-recipes/recipes/mtnucratio/mtnucratio.py
./bioconda-recipes/recipes/multivcfanalyzer/multivcfanalyzer.py
./bioconda-recipes/recipes/muscle/vcxproj_make.py
./bioconda-recipes/recipes/mztosqlite/mz_to_sqlite.py
./bioconda-recipes/recipes/needletail/run_test.py
./bioconda-recipes/recipes/ngsep/ngsep.py
./bioconda-recipes/recipes/np-likeness-scorer/np-likeness.py
./bioconda-recipes/recipes/npinv/npinv.py
./bioconda-recipes/recipes/pangolin/run_test.py
./bioconda-recipes/recipes/pantools/pantools.py
./bioconda-recipes/recipes/pathogist/setup.py
./bioconda-recipes/recipes/pathwaymatcher/pathwaymatcher.py
./bioconda-recipes/recipes/pepgenome/pepgenome.py
./bioconda-recipes/recipes/peptide-shaker/peptide-shaker.py
./bioconda-recipes/recipes/pgdspider/PGDSpider2-cli.py
./bioconda-recipes/recipes/pgdspider/PGDSpider2-gui.py
./bioconda-recipes/recipes/phylip/drawgram.py
./bioconda-recipes/recipes/phylip/drawtree.py
./bioconda-recipes/recipes/phylip/phylip.py
./bioconda-recipes/recipes/pilon/pilon.py
./bioconda-recipes/recipes/popoolation2/mpileup2sync.py
./bioconda-recipes/recipes/privateer/run_test.py
./bioconda-recipes/recipes/pycoverm/run_test.py
./bioconda-recipes/recipes/pymot/setup.py
./bioconda-recipes/recipes/pyopt/run_test.py
./bioconda-recipes/recipes/pysam/run_test.py
./bioconda-recipes/recipes/quasirecomb/quasirecomb.py
./bioconda-recipes/recipes/rapgreen/rapgreen.py
./bioconda-recipes/recipes/rdptools/AbundanceStats.py
./bioconda-recipes/recipes/reseek/vcxproj_make.py
./bioconda-recipes/recipes/reseek/vcxproj_make_osx.py
./bioconda-recipes/recipes/rnablueprint/run_test.py
./bioconda-recipes/recipes/searchgui/searchgui.py
./bioconda-recipes/recipes/sem/sem.py
./bioconda-recipes/recipes/snpeff/snpeff.py
./bioconda-recipes/recipes/snpsift/snpsift.py
./bioconda-recipes/recipes/snver/SNVerIndividual.py
./bioconda-recipes/recipes/snver/SNVerPool.py
./bioconda-recipes/recipes/spectra-cluster-cli/spectra-cluster-cli.py
./bioconda-recipes/recipes/submission-tool-validator/submission-tool-validator.py
./bioconda-recipes/recipes/thesias/THESIAS.py
./bioconda-recipes/recipes/tobias/setup.py
./bioconda-recipes/recipes/topas/topas.py
./bioconda-recipes/recipes/transabyss/setup.py
./bioconda-recipes/recipes/transcriptm/setup.py
./bioconda-recipes/recipes/tribal/run_test.py
./bioconda-recipes/recipes/trimmomatic/trimmomatic.py
./bioconda-recipes/recipes/umicollapse/umicollapse.py
./bioconda-recipes/recipes/validate-fasta-database/validate-fasta-database.py
./bioconda-recipes/recipes/variantmap/run_test.py
./bioconda-recipes/recipes/vcf2genome/vcf2genome.py
./bioconda-recipes/recipes/wdltool/wdltool.py
./bioconda-recipes/recipes/weeder/weeder2.py
./bioconda-recipes/recipes/wtforms-components/setup.py
./bioconda-recipes/scripts/__init__.py
./bioconda-recipes/scripts/bump-build.py
./bioconda-recipes/scripts/indentation-fixer.py
./bioconda-recipes/scripts/removeFromBlacklist.py
./bioconda-recipes/scripts/rootNodes.py
./bioconda-recipes/scripts/bioconductor/missingCranPackages.py
./bioconda-recipes/scripts/bioconductor/rootNodes.py
./bioconda-recipes/scripts/ucsc/create-ucsc-packages.py
./kompot/__init__.py
./kompot/batch_utils.py
./kompot/memory_utils.py
./kompot/resource_estimation.py
./kompot/utils.py
./kompot/version.py
./kompot/anndata/__init__.py
./kompot/anndata/cleanup.py
./kompot/anndata/differential_abundance.py
./kompot/anndata/differential_expression.py
./kompot/anndata/fdr_utils.py
./kompot/anndata/utils.py
./kompot/anndata/utils/__init__.py
./kompot/anndata/utils/field_tracking.py
./kompot/anndata/utils/group_utils.py
./kompot/anndata/utils/json_utils.py
./kompot/anndata/utils/runinfo.py
./kompot/cli/__init__.py
./kompot/cli/__main__.py
./kompot/cli/da.py
./kompot/cli/de.py
./kompot/cli/dm.py
./kompot/cli/main.py
./kompot/cli/utils.py
./kompot/cli/templates/da_config_minimal.yaml
./kompot/cli/templates/da_config_template.yaml
./kompot/cli/templates/de_config_minimal.yaml
./kompot/cli/templates/de_config_template.yaml
./kompot/cli/templates/dm_config_minimal.yaml
./kompot/cli/templates/dm_config_template.yaml
./kompot/differential/__init__.py
./kompot/differential/differential_abundance.py
./kompot/differential/differential_expression.py
./kompot/differential/sample_variance_estimator.py
./kompot/differential/utils.py
./kompot/plot/__init__.py
./kompot/plot/embedding.py
./kompot/plot/expression.py
./kompot/plot/field_inference.py
./kompot/plot/heatmap.py
./kompot/plot/stringdb.py
./kompot/plot/volcano.py
./kompot/plot/heatmap/__init__.py
./kompot/plot/heatmap/core.py
./kompot/plot/heatmap/direction_plot.py
./kompot/plot/heatmap/utils.py
./kompot/plot/heatmap/visualization.py
./kompot/plot/volcano/__init__.py
./kompot/plot/volcano/da.py
./kompot/plot/volcano/de.py
./kompot/plot/volcano/multi_da.py
./kompot/plot/volcano/utils.py
bioconda-recipes/recipes/hap.py
bioconda-recipes/recipes/roary2fripan.py
bioconda-recipes/recipes/velocyto.py
bioconda-recipes/recipes/adapterremovalfixprefix/AdapterRemovalFixPrefix.py
bioconda-recipes/recipes/astral-tree/astral.py
bioconda-recipes/recipes/bamr/run_test.py
bioconda-recipes/recipes/bioconda-repodata-patches/gen_patch_json.py
bioconda-recipes/recipes/bioconda-repodata-patches/show_diff.py
bioconda-recipes/recipes/biopet/biopet.py
bioconda-recipes/recipes/biopet-bamstats/biopet-bamstats.py
bioconda-recipes/recipes/biopet-basecounter/biopet-basecounter.py
bioconda-recipes/recipes/biopet-extractadaptersfastqc/biopet-extractadaptersfastqc.py
bioconda-recipes/recipes/biopet-fastqsplitter/biopet-fastqsplitter.py
bioconda-recipes/recipes/biopet-sampleconfig/biopet-sampleconfig.py
bioconda-recipes/recipes/biopet-scatterregions/biopet-scatterregions.py
bioconda-recipes/recipes/biopet-seattleseqkit/biopet-seattleseqkit.py
bioconda-recipes/recipes/biopet-seqstat/biopet-seqstat.py
bioconda-recipes/recipes/biopet-validateannotation/biopet-validateannotation.py
bioconda-recipes/recipes/biopet-validatefastq/biopet-validatefastq.py
bioconda-recipes/recipes/biopet-validatevcf/biopet-validatevcf.py
bioconda-recipes/recipes/biopet-vcffilter/biopet-vcffilter.py
bioconda-recipes/recipes/biopet-vcfstats/biopet-vcfstats.py
bioconda-recipes/recipes/biotransformer/biotransformer.py
bioconda-recipes/recipes/calitas/calitas.py
bioconda-recipes/recipes/cgview/cgview.py
bioconda-recipes/recipes/cialign/run_test.py
bioconda-recipes/recipes/circularmapper/circulargenerator.py
bioconda-recipes/recipes/circularmapper/realignsamfile.py
bioconda-recipes/recipes/clinod/clinod.py
bioconda-recipes/recipes/clipandmerge/clipandmerge.py
bioconda-recipes/recipes/cliquesnv/cliquesnv.py
bioconda-recipes/recipes/clove/clove.py
bioconda-recipes/recipes/coot-headless/run_test.py
bioconda-recipes/recipes/crisper_recognition_tool/crt.py
bioconda-recipes/recipes/cvbio/cvbio.py
bioconda-recipes/recipes/damageprofiler/damageprofiler.py
bioconda-recipes/recipes/dedup/dedup.py
bioconda-recipes/recipes/deepvariant/dv_call_variants.py
bioconda-recipes/recipes/deepvariant/dv_make_examples.py
bioconda-recipes/recipes/deepvariant/dv_postprocess_variants.py
bioconda-recipes/recipes/dfam/download-dfam.py
bioconda-recipes/recipes/dia_umpire/dia_umpire_quant.py
bioconda-recipes/recipes/dia_umpire/dia_umpire_se.py
bioconda-recipes/recipes/diatracer/diatracer.py
bioconda-recipes/recipes/dinosaur/dinosaur.py
bioconda-recipes/recipes/effectivet3/effectivet3.py
bioconda-recipes/recipes/ega-cryptor/ega-cryptor.py
bioconda-recipes/recipes/ega2/ega2.py
bioconda-recipes/recipes/embassy-phylip/fix_acd_path.py
bioconda-recipes/recipes/embl-api-validator/embl-api-validator.py
bioconda-recipes/recipes/emboss/fix_acd_path.py
bioconda-recipes/recipes/ena-webin-cli/ena_webin_cli.py
bioconda-recipes/recipes/encyclopedia/encyclopedia.py
bioconda-recipes/recipes/examine/examine.py
bioconda-recipes/recipes/fgbio/fgbio.py
bioconda-recipes/recipes/fgbio-minimal/fgbio.py
bioconda-recipes/recipes/fgsv/fgsv.py
bioconda-recipes/recipes/figtree/figtree.py
bioconda-recipes/recipes/fiji/hello.py
bioconda-recipes/recipes/fseq/fseq.py
bioconda-recipes/recipes/gametes/gametes.py
bioconda-recipes/recipes/gatk/gatk.py
bioconda-recipes/recipes/gemoma/GeMoMa.py
bioconda-recipes/recipes/gfinisher/gfinisher.py
bioconda-recipes/recipes/goenrichment/goenrichment.py
bioconda-recipes/recipes/goslimmer/goslimmer.py
bioconda-recipes/recipes/hap-ibd/hap-ibd.py
bioconda-recipes/recipes/haploview/haploview.py
bioconda-recipes/recipes/hops/MaltExtract.py
bioconda-recipes/recipes/hops/hops.py
bioconda-recipes/recipes/ionquant/ionquant.py
bioconda-recipes/recipes/jasmine/jasmine.py
bioconda-recipes/recipes/jgoslin/jgoslin.py
bioconda-recipes/recipes/jmztab-m/jmztab-m.py
bioconda-recipes/recipes/jvarkit-msa2vcf/msa2vcf.py
bioconda-recipes/recipes/jvarkit-wgscoverageplotter/wgscoverageplotter.py
bioconda-recipes/recipes/kcftools/kcftools.py
bioconda-recipes/recipes/kinamine_y_shaker/kinamine_y_shaker.py
bioconda-recipes/recipes/ldsc/setup.py
bioconda-recipes/recipes/mango/run_test.py
bioconda-recipes/recipes/maxquant/xmlcombine.py
bioconda-recipes/recipes/mgf-formatter/mgf-formatter.py
bioconda-recipes/recipes/mhap/mhap.py
bioconda-recipes/recipes/mobster/mobster-to-vcf.py
bioconda-recipes/recipes/mobster/mobster.py
bioconda-recipes/recipes/mpa-portable/mpa-portable.py
bioconda-recipes/recipes/mpa-server/mpa-server.py
bioconda-recipes/recipes/msfragger/msfragger.py
bioconda-recipes/recipes/msgf_plus/msgf_plus.py
bioconda-recipes/recipes/mtnucratio/mtnucratio.py
bioconda-recipes/recipes/multivcfanalyzer/multivcfanalyzer.py
bioconda-recipes/recipes/muscle/vcxproj_make.py
bioconda-recipes/recipes/mztosqlite/mz_to_sqlite.py
bioconda-recipes/recipes/needletail/run_test.py
bioconda-recipes/recipes/ngsep/ngsep.py
bioconda-recipes/recipes/np-likeness-scorer/np-likeness.py
bioconda-recipes/recipes/npinv/npinv.py
bioconda-recipes/recipes/pangolin/run_test.py
bioconda-recipes/recipes/pantools/pantools.py
bioconda-recipes/recipes/pathogist/setup.py
bioconda-recipes/recipes/pathwaymatcher/pathwaymatcher.py
bioconda-recipes/recipes/pepgenome/pepgenome.py
bioconda-recipes/recipes/peptide-shaker/peptide-shaker.py
bioconda-recipes/recipes/pgdspider/PGDSpider2-cli.py
bioconda-recipes/recipes/pgdspider/PGDSpider2-gui.py
bioconda-recipes/recipes/phylip/drawgram.py
bioconda-recipes/recipes/phylip/drawtree.py
bioconda-recipes/recipes/phylip/phylip.py
bioconda-recipes/recipes/pilon/pilon.py
bioconda-recipes/recipes/popoolation2/mpileup2sync.py
bioconda-recipes/recipes/privateer/run_test.py
bioconda-recipes/recipes/pycoverm/run_test.py
bioconda-recipes/recipes/pymot/setup.py
bioconda-recipes/recipes/pyopt/run_test.py
bioconda-recipes/recipes/pysam/run_test.py
bioconda-recipes/recipes/quasirecomb/quasirecomb.py
bioconda-recipes/recipes/rapgreen/rapgreen.py
bioconda-recipes/recipes/rdptools/AbundanceStats.py
bioconda-recipes/recipes/reseek/vcxproj_make.py
bioconda-recipes/recipes/reseek/vcxproj_make_osx.py
bioconda-recipes/recipes/rnablueprint/run_test.py
bioconda-recipes/recipes/searchgui/searchgui.py
bioconda-recipes/recipes/sem/sem.py
bioconda-recipes/recipes/snpeff/snpeff.py
bioconda-recipes/recipes/snpsift/snpsift.py
bioconda-recipes/recipes/snver/SNVerIndividual.py
bioconda-recipes/recipes/snver/SNVerPool.py
bioconda-recipes/recipes/spectra-cluster-cli/spectra-cluster-cli.py
bioconda-recipes/recipes/submission-tool-validator/submission-tool-validator.py
bioconda-recipes/recipes/thesias/THESIAS.py
bioconda-recipes/recipes/tobias/setup.py
bioconda-recipes/recipes/topas/topas.py
bioconda-recipes/recipes/transabyss/setup.py
bioconda-recipes/recipes/transcriptm/setup.py
bioconda-recipes/recipes/tribal/run_test.py
bioconda-recipes/recipes/trimmomatic/trimmomatic.py
bioconda-recipes/recipes/umicollapse/umicollapse.py
bioconda-recipes/recipes/validate-fasta-database/validate-fasta-database.py
bioconda-recipes/recipes/variantmap/run_test.py
bioconda-recipes/recipes/vcf2genome/vcf2genome.py
bioconda-recipes/recipes/wdltool/wdltool.py
bioconda-recipes/recipes/weeder/weeder2.py
bioconda-recipes/recipes/wtforms-components/setup.py
bioconda-recipes/scripts/__init__.py
bioconda-recipes/scripts/bump-build.py
bioconda-recipes/scripts/indentation-fixer.py
bioconda-recipes/scripts/removeFromBlacklist.py
bioconda-recipes/scripts/rootNodes.py
bioconda-recipes/scripts/bioconductor/missingCranPackages.py
bioconda-recipes/scripts/bioconductor/rootNodes.py
bioconda-recipes/scripts/ucsc/create-ucsc-packages.py
kompot/__init__.py
kompot/batch_utils.py
kompot/memory_utils.py
kompot/resource_estimation.py
kompot/utils.py
kompot/version.py
kompot.egg-info/PKG-INFO
kompot.egg-info/SOURCES.txt
kompot.egg-info/dependency_links.txt
kompot.egg-info/entry_points.txt
kompot.egg-info/requires.txt
kompot.egg-info/top_level.txt
kompot/anndata/__init__.py
kompot/anndata/cleanup.py
kompot/anndata/differential_abundance.py
kompot/anndata/differential_expression.py
kompot/anndata/fdr_utils.py
kompot/anndata/utils.py
kompot/anndata/utils/__init__.py
kompot/anndata/utils/field_tracking.py
kompot/anndata/utils/group_utils.py
kompot/anndata/utils/json_utils.py
kompot/anndata/utils/runinfo.py
kompot/cli/__init__.py
kompot/cli/__main__.py
kompot/cli/da.py
kompot/cli/de.py
kompot/cli/dm.py
kompot/cli/main.py
kompot/cli/utils.py
kompot/cli/templates/da_config_minimal.yaml
kompot/cli/templates/da_config_template.yaml
kompot/cli/templates/de_config_minimal.yaml
kompot/cli/templates/de_config_template.yaml
kompot/cli/templates/dm_config_minimal.yaml
kompot/cli/templates/dm_config_template.yaml
kompot/differential/__init__.py
kompot/differential/differential_abundance.py
kompot/differential/differential_expression.py
kompot/differential/sample_variance_estimator.py
kompot/differential/utils.py
kompot/plot/__init__.py
kompot/plot/embedding.py
kompot/plot/expression.py
kompot/plot/field_inference.py
kompot/plot/heatmap.py
kompot/plot/stringdb.py
kompot/plot/volcano.py
kompot/plot/heatmap/__init__.py
kompot/plot/heatmap/core.py
kompot/plot/heatmap/direction_plot.py
kompot/plot/heatmap/utils.py
kompot/plot/heatmap/visualization.py
kompot/plot/volcano/__init__.py
kompot/plot/volcano/da.py
kompot/plot/volcano/de.py
kompot/plot/volcano/multi_da.py
kompot/plot/volcano/utils.py