LICENSE
MANIFEST.in
README.md
metaLncRNA_config.yaml
pyproject.toml
examples/sample.fasta
src/metalncrna/__init__.py
src/metalncrna/cli.py
src/metalncrna.egg-info/PKG-INFO
src/metalncrna.egg-info/SOURCES.txt
src/metalncrna.egg-info/dependency_links.txt
src/metalncrna.egg-info/entry_points.txt
src/metalncrna.egg-info/requires.txt
src/metalncrna.egg-info/top_level.txt
src/metalncrna/adapters/base.py
src/metalncrna/adapters/cnci.py
src/metalncrna/adapters/cpat.py
src/metalncrna/adapters/cpc2.py
src/metalncrna/adapters/cppred.py
src/metalncrna/adapters/lgc.py
src/metalncrna/adapters/plek.py
src/metalncrna/adapters/rnasamba.py
src/metalncrna/data/default_config.yaml
src/metalncrna/engine/consensus.py
src/metalncrna/engine/dispatcher.py
src/metalncrna/engine/trainer.py
src/metalncrna/third_party/__init__.py
src/metalncrna/third_party/CNCI/CNCI.py
src/metalncrna/third_party/CNCI/Gtf.py
src/metalncrna/third_party/CNCI/gtf2Bed.pl
src/metalncrna/third_party/CNCI/CNCI_Parameters/CNCI_matrix
src/metalncrna/third_party/CNCI/CNCI_Parameters/plant.matrix
src/metalncrna/third_party/CNCI/CNCI_Parameters/plant_model
src/metalncrna/third_party/CNCI/CNCI_Parameters/plant_scale
src/metalncrna/third_party/CNCI/CNCI_Parameters/python_model
src/metalncrna/third_party/CNCI/CNCI_Parameters/python_scale
src/metalncrna/third_party/CPPred/__init__.py
src/metalncrna/third_party/CPPred/Hexamer/Human_Hexamer.tsv
src/metalncrna/third_party/CPPred/Human_Model/Human.model
src/metalncrna/third_party/CPPred/Human_Model/Human.range
src/metalncrna/third_party/CPPred/bin/CPPred_fixed.py
src/metalncrna/third_party/CPPred/bin/__init__.py
src/metalncrna/third_party/CPPred/bin/feamodule/CTD.py
src/metalncrna/third_party/CPPred/bin/feamodule/FrameKmer.py
src/metalncrna/third_party/CPPred/bin/feamodule/ORF.py
src/metalncrna/third_party/CPPred/bin/feamodule/ORF_length.py
src/metalncrna/third_party/CPPred/bin/feamodule/ProtParam.py
src/metalncrna/third_party/CPPred/bin/feamodule/__init__.py
src/metalncrna/third_party/CPPred/bin/feamodule/fickett.py
src/metalncrna/third_party/LGC/scr/lgc-1.0.0.py
src/metalncrna/utils/agent.py
src/metalncrna/utils/downloader.py
src/metalncrna/utils/envs.py
src/metalncrna/utils/fasta.py
src/metalncrna/utils/logger.py
src/metalncrna/utils/reports.py
src/metalncrna/utils/setup_envs.py
tests/test_adapters_mock.py
tests/test_agent.py
tests/test_consensus.py
tests/test_cpc2_parsing.py