# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# Virtual environments
.venv/
venv/
env/

# Packaging artifacts
build/
dist/
*.egg-info/
.eggs/

# Tool caches
.pytest_cache/
.ruff_cache/
.mypy_cache/
.ipynb_checkpoints/

# Coverage artifacts
.coverage
.coverage.*
coverage.xml
htmlcov/

# Jupyter
*.nbconvert.ipynb

# Documentation builds
docs/_build/
docs/generated/
# Reference PDFs dropped into docs/ (e.g. the methods manuscript) never ship.
docs/*.pdf

# Local outputs and large generated media
Output/
OLD/morphosim/.temp/
*.mp4
*.usd
*.vtksz

# OS files
.DS_Store
Thumbs.db

# IDE
.idea/
.vscode/

# Data / traces
trace
trace.clay


# Files
meshes/*
*.html
# ...but keep the Sphinx layout override (favicon/manifest head links).
!docs/_templates/layout.html
*.usd
*.pkl
*.ipynb
*.zip
*.tex
*.renamebak
*.out
