.gitignore
Dockerfile
LICENSE
README.md
environment.yaml
explore_dataset.ipynb
mkdocs.yml
pyproject.toml
setup.py
.github/workflows/build-container.yml
.github/workflows/deploy-docs.yml
.github/workflows/pypi.yml
.github/workflows/python-tests.yml
docs/basic_usage.md
docs/cli.md
docs/examples.md
docs/faq.md
docs/index.md
docs/installation.md
docs/quick_start.md
docs/troubleshooting.md
docs/api/bamstore.md
docs/api/quantnado.md
docs/assets/images/logo.png
docs/cli/call_peaks.md
docs/cli/create_dataset.md
docs/cli/index.md
example/create_dataset.ipynb
example/explore_dataset.ipynb
quantnado/__init__.py
quantnado/_version.py
quantnado/api.py
quantnado/cli.py
quantnado/utils.py
quantnado.egg-info/PKG-INFO
quantnado.egg-info/SOURCES.txt
quantnado.egg-info/dependency_links.txt
quantnado.egg-info/entry_points.txt
quantnado.egg-info/requires.txt
quantnado.egg-info/top_level.txt
quantnado/dataset/__init__.py
quantnado/dataset/bam.py
quantnado/dataset/core.py
quantnado/dataset/counts.py
quantnado/dataset/enums.py
quantnado/dataset/features.py
quantnado/dataset/metadata.py
quantnado/dataset/pca.py
quantnado/dataset/ranges.py
quantnado/dataset/reduce.py
quantnado/peak_calling/call_quantile_peaks.py
tests/conftest.py
tests/test_bam_store.py
tests/test_dataset_flow.py
tests/cli/__init__.py
tests/cli/test_cli.py
tests/integration/__init__.py
tests/integration/test_bam_store.py
tests/integration/test_feature_counts.py
tests/integration/test_peak_calling.py
tests/integration/test_quantnado_api.py
tests/integration/test_reduce.py
tests/unit/__init__.py
tests/unit/test_enums.py
tests/unit/test_pca.py
tests/unit/test_utils.py