LICENSE
MANIFEST.in
README.md
environment-cpu.yml
pyproject.toml
setup.py
hapla/__init__.py
hapla/admix.py
hapla/admix_cy.pyx
hapla/cluster.py
hapla/dating.py
hapla/deconv.py
hapla/eval.py
hapla/eval_cy.pyx
hapla/formats.py
hapla/functions.py
hapla/grouping.py
hapla/identity.py
hapla/local.py
hapla/local_cy.pyx
hapla/main.py
hapla/maps.py
hapla/packed_cy.pyx
hapla/predict.py
hapla/runtime.py
hapla/sharing.py
hapla/sharing_cy.pyx
hapla/struct.py
hapla/struct_cy.pyx
hapla/vcf_cy.pyx
hapla/windows.py
hapla.egg-info/PKG-INFO
hapla.egg-info/SOURCES.txt
hapla.egg-info/dependency_links.txt
hapla.egg-info/entry_points.txt
hapla.egg-info/requires.txt
hapla.egg-info/top_level.txt
licenses/GCC-runtime.txt
licenses/HTSlib.txt
licenses/LLVM-OpenMP.txt
licenses/libdeflate.txt
tests/build_htslib.py
tests/helpers.py
tests/run.py
tests/test_adaptive.py
tests/test_admix.py
tests/test_admix_prior.py
tests/test_cluster_engine.py
tests/test_deconv.py
tests/test_eval.py
tests/test_formats.py
tests/test_grouping.py
tests/test_local.py
tests/test_loo.py
tests/test_maps.py
tests/test_prediction.py
tests/test_runtime.py
tests/test_sharing.py
tests/test_streaming.py
tests/test_struct.py
tests/test_structure_contracts.py
tests/test_validation.py
tests/validate_distribution.py