[91mrun[0m /tmp/dralph/partis-411/bin/FastTree-linux -gtr -nt -out /tmp/dralph/partis-411/test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-1/fasttree.out /tmp/dralph/partis-411/test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-1/input-seqs.fa
FastTree Version 2.1.10 SSE3
Alignment: /tmp/dralph/partis-411/test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-1/input-seqs.fa
Nucleotide distances: Jukes-Cantor Joins: balanced Support: SH-like 1000
Search: Normal +NNI +SPR (2 rounds range 10) +ML-NNI opt-each=1
TopHits: 1.00*sqrtN close=default refresh=0.80
ML Model: Generalized Time-Reversible, CAT approximation with 20 rate categories
Ignored unknown character X (seen 30 times)
Initial topology in 0.00 seconds
Refining topology: 13 rounds ME-NNIs, 2 rounds ME-SPRs, 7 rounds ML-NNIs
Total branch-length 0.278 after 0.02 sec
ML-NNI round 1: LogLk = -1081.011 NNIs 0 max delta 0.00 Time 0.04
GTR Frequencies: 0.2088 0.2542 0.3266 0.2104
GTR rates(ac ag at cg ct gt) 0.9113 0.7759 0.7906 0.7584 0.8843 1.0000
      0.10 seconds: ML Lengths 1 of 8 splits
Switched to using 20 rate categories (CAT approximation)
Rate categories were divided by 0.689 so that average rate = 1.0
CAT-based log-likelihoods may not be comparable across runs
Use -gamma for approximate but comparable Gamma(20) log-likelihoods
ML-NNI round 2: LogLk = -1041.857 NNIs 0 max delta 0.00 Time 0.13
Turning off heuristics for final round of ML NNIs (converged)
ML-NNI round 3: LogLk = -1041.857 NNIs 0 max delta 0.00 Time 0.14 (final)
Optimize all lengths: LogLk = -1041.857 Time 0.15
Total time: 0.16 seconds Unique: 10/10 Bad splits: 0/7