LICENSE
README.md
pyproject.toml
minerva/__init__.py
minerva/backbones.py
minerva/constants.py
minerva/data.py
minerva/finetuning.py
minerva/gene_calling.py
minerva/interaction_heads.py
minerva/jacobian.py
minerva/losses.py
minerva/masking.py
minerva/modeling_minerva.py
minerva/modeling_rinalmo.py
minerva/rna_structure.py
minerva/sequence_utils.py
minerva/tokenization_rinalmo.py
minerva/visualization.py
minerva/example_data/TwoAYGGAY_Pseudomonas_fluorescens_SBW25.gb
minerva/example_data/UG27_systems.gb
minerva/vendor_rinalmo/LICENSE
minerva/vendor_rinalmo/__init__.py
minerva/vendor_rinalmo/attention.py
minerva/vendor_rinalmo/model.py
minerva/vendor_rinalmo/modules.py
minerva/vendor_rinalmo/rope.py
minerva_dna.egg-info/PKG-INFO
minerva_dna.egg-info/SOURCES.txt
minerva_dna.egg-info/dependency_links.txt
minerva_dna.egg-info/requires.txt
minerva_dna.egg-info/top_level.txt
tests/test_backbones.py
tests/test_examples_and_viewer.py
tests/test_model_correctness.py
tests/test_modeling_rinalmo.py
tests/test_notebooks.py
tests/test_rna_structure.py
tests/test_sequence_dataset.py
tests/test_sequence_utils.py