.gitignore
LICENSE
README.md
analyze.py
compute_embedding.py
compute_state.py
compute_trajectory.py
estimate_conformational_density.py
estimate_stable_states.py
ewald_test_cg.ipynb
extract_image_subset.py
extract_image_subset_from_kmeans.py
make_spike_datasets.py
make_test_dataset.py
outlier_detection.py
output_visualization.ipynb
pipeline.py
pipeline_with_outliers.py
pyproject.toml
recovar_coding_tutorial.ipynb
requirements.txt
run_test_dataset.py
recovar/EM_iteration.py
recovar/__init__.py
recovar/adaptive_homogeneous.py
recovar/adaptive_kernel_discretization.py
recovar/adaptive_kernel_two.py
recovar/config.py
recovar/constants.py
recovar/core.py
recovar/covariance_core.py
recovar/covariance_estimation.py
recovar/cryodrgn_load.py
recovar/cryodrgn_mrcfile.py
recovar/cryodrgn_source.py
recovar/cryodrgn_starfile.py
recovar/cryojax_map_coordinates.py
recovar/csparc_bind.py
recovar/dataset.py
recovar/deconvolve_density.py
recovar/downsample.py
recovar/embedding.py
recovar/ewald.py
recovar/fourier_transform_utils.py
recovar/heterogeneity_volume.py
recovar/homogeneous.py
recovar/image_assignment.py
recovar/jax_map_squared.py
recovar/latent_density.py
recovar/linalg.py
recovar/locres.py
recovar/mask.py
recovar/metrics.py
recovar/noise.py
recovar/nystrom_test.py
recovar/output.py
recovar/padding.py
recovar/parser_args.py
recovar/plot_utils.py
recovar/pose_refinement.py
recovar/ppca.py
recovar/principal_components.py
recovar/regularization.py
recovar/relion_functions.py
recovar/simulate_scattering_potential.py
recovar/simulator.py
recovar/small_experiment.py
recovar/synthetic_dataset.py
recovar/tilt_dataset.py
recovar/trajectory.py
recovar/utils.py
recovar.egg-info/PKG-INFO
recovar.egg-info/SOURCES.txt
recovar.egg-info/dependency_links.txt
recovar.egg-info/entry_points.txt
recovar.egg-info/requires.txt
recovar.egg-info/top_level.txt
recovar/data/atom_coeffs_extended.json
recovar/data/ctf_10076.pkl
recovar/data/ctf_10180.pkl
recovar/data/noise_10076.pkl
recovar/data/poses_10076.pkl
recovar/data/poses_10180.pkl
recovar/data/vol0000.mrc
recovar/data/vol0001.mrc
recovar/data/vol0002.mrc