# Python bytecode / caches
__pycache__/
*.py[cod]

# Test and tooling caches
.pytest_cache/
.coverage
.mypy_cache/

# Build / packaging artifacts
build/
dist/
*.egg-info/
pip-wheel-metadata/

# Rust extension build artifacts
target/
# Compiled extension from `maturin develop` (lands inside phenoms/ in editable installs)
phenoms/*.so
phenoms/*.pyd
phenoms/*.dll

# Conda build artifacts
condaenv.*.requirements.txt

# Local heavy test artifacts (not source code)
phenoms/test_data/
phenoms/test_outputs/
phenom_outputs/

# Paper / manuscript materials (local only)
paper_materials/

# Local heavy trajectory / topology data
plcg2_data/

# Non-package project/work-in-progress
H_bond_work/
old_scripts/

# Local editor/project state
.vscode/
.cursor/

# Local exported structures
protein_pdb_exports/

*.svg
*.cdxml

# Sphinx
docs/_build/

# Local scratch / publication notes
for_publication_*.txt
