pyproject.toml
lls_core/__init__.py
lls_core/_version.py
lls_core/config.py
lls_core/cropping.py
lls_core/czi_reader.py
lls_core/deconvolution.py
lls_core/estimate.py
lls_core/llsz_core.py
lls_core/metadata.py
lls_core/mip.py
lls_core/shear_only_deskew.py
lls_core/shear_only_geometry.py
lls_core/types.py
lls_core/utils.py
lls_core/workflow.py
lls_core/writers.py
lls_core.egg-info/PKG-INFO
lls_core.egg-info/SOURCES.txt
lls_core.egg-info/dependency_links.txt
lls_core.egg-info/entry_points.txt
lls_core.egg-info/requires.txt
lls_core.egg-info/scm_file_list.json
lls_core.egg-info/scm_version.json
lls_core.egg-info/top_level.txt
lls_core/cmds/__init__.py
lls_core/cmds/__main__.py
lls_core/kernels/affine_transform_deskew_x_shear_only_3d_x.cl
lls_core/kernels/affine_transform_deskew_y_shear_only_3d_x.cl
lls_core/models/__init__.py
lls_core/models/crop.py
lls_core/models/deconvolution.py
lls_core/models/deskew.py
lls_core/models/lattice_data.py
lls_core/models/output.py
lls_core/models/results.py
lls_core/models/utils.py
lls_core/sample/LLS7_t1_ch1.czi
lls_core/sample/LLS7_t1_ch3.czi
lls_core/sample/LLS7_t2_ch1.czi
lls_core/sample/LLS7_t2_ch3.czi
lls_core/sample/RBC_lattice.tif
lls_core/sample/RBC_tiny.czi
lls_core/sample/README.txt
lls_core/sample/__init__.py
lls_core/sample/multich_multi_time.tif
lls_core/sample/config/README.md
lls_core/sample/config/config.yaml
lls_core/sample/config/config.yml
lls_core/sample/psfs/zeiss_simulated/488.czi
lls_core/sample/psfs/zeiss_simulated/488.tif
lls_core/sample/psfs/zeiss_simulated/561.czi
lls_core/sample/psfs/zeiss_simulated/561.tif
lls_core/sample/psfs/zeiss_simulated/640.czi
lls_core/sample/psfs/zeiss_simulated/640.tif
lls_core/sample/psfs/zeiss_simulated/README.md
lls_core/sample/psfs/zeiss_simulated/description.txt
tests/__init__.py
tests/conftest.py
tests/params.py
tests/reference_deskew.py
tests/test_arg_parser.py
tests/test_cli.py
tests/test_crop_deskew.py
tests/test_crop_placement.py
tests/test_czi_reader.py
tests/test_deconvolution.py
tests/test_deskew.py
tests/test_memory_warning.py
tests/test_metadata_sidecar.py
tests/test_mip.py
tests/test_output_dtype.py
tests/test_parallel_processing.py
tests/test_process.py
tests/test_roi_units.py
tests/test_shear_only.py
tests/test_validation.py
tests/test_workflows.py
tests/utils.py
tests/data/deconvolved.tif
tests/data/psf.tif
tests/data/raw.tif
tests/data/crop/roi_1.tif
tests/data/crop/roi_2.tif
tests/data/crop/two_rois.zip
tests/workflows/argument_order/custom_function.py
tests/workflows/argument_order/test_workflow.yml
tests/workflows/binarisation/workflow.yml