Coverage for /home/deng/Projects/ete4/hackathon/ete4/ete4/smartview/renderer/layouts/eggnog6_layouts.py: 86%
21 statements
« prev ^ index » next coverage.py v7.2.7, created at 2024-03-21 09:19 +0100
« prev ^ index » next coverage.py v7.2.7, created at 2024-03-21 09:19 +0100
1from ..treelayout import TreeLayout, _LayoutNodeProperty, cased_name
2from ..faces import TextFace
4from ..draw_helpers import summary, Padding
5from .evol_events_layouts import LayoutEvolEvents
6from .ncbi_taxonomy_layouts import LayoutLastCommonAncestor
7from .domain_layouts import LayoutPfamDomains, LayoutSmartDomains
10def create_property_layout(prop, name, color, pos, active, column):
11 # branch_right; column 2; color black
12 class Layout(_LayoutNodeProperty):
13 def __init__(self, prop=prop, name=name, pos=pos, column=column, color=color,
14 *args, **kwargs):
15 super().__init__(prop=prop, name=name, pos=pos, column=column, color=color,
16 *args, **kwargs)
17 self.active = active
19 def __name__(self):
20 return layout_name
22 layout_name = "Layout" + cased_name(name)
23 Layout.__name__ = layout_name
24 globals()[layout_name] = Layout
25 return Layout
28prop_layout_args = [
29 [ "sci_name", "Scientific name", "black", "branch_right", True ],
30 [ "best_name", "Best name", "black", "aligned", False ],
31 [ "prot_name", "Protein name", "gray", "aligned", False ],
32 [ "cazy", "Cazy", "gray", "aligned", False ],
33 [ "card", "CARD", "gray", "aligned", False ],
34 [ "pdb", "PDB", "gray", "aligned", False ],
35 [ "bigg", "BIGG", "gray", "aligned", False ],
36 [ "kegg_number", "KEGG number", "gray", "aligned", False ],
37 [ "kegg_pathway", "KEGG pathway", "gray", "aligned", False ],
38 [ "kegg_module", "KEGG module", "gray", "aligned", False ],
39 [ "kegg_enzyme", "KEGG enzyme", "gray", "aligned", False ],
40 # [ "GOslim", "GOslim", "gray", "aligned", False ],
41 ]
43col0 = 2
44prop_layouts = [ create_property_layout(*args, i+col0)\
45 for i, args in enumerate(prop_layout_args) ]
48__all__ = [ *[layout.__name__ for layout in prop_layouts],
49 "LayoutEvolEvents", "LayoutLastCommonAncestor",
50 "LayoutPfamDomains", "LayoutSmartDomains" ]