LICENSE
README.md
pyproject.toml
setup.py
napxplorer/__init__.py
napxplorer/__version__.py
napxplorer.egg-info/PKG-INFO
napxplorer.egg-info/SOURCES.txt
napxplorer.egg-info/dependency_links.txt
napxplorer.egg-info/entry_points.txt
napxplorer.egg-info/requires.txt
napxplorer.egg-info/top_level.txt
napxplorer/benchmark/ARG_nuc_edge_analysis.py
napxplorer/benchmark/H-BOND_score_vs_energy_analysis.py
napxplorer/benchmark/NAxplorer_vs_PRince_surface_residues_benchmark.py
napxplorer/benchmark/__init__.py
napxplorer/benchmark/analyze_af3_preservation.py
napxplorer/benchmark/benchmark.py
napxplorer/benchmark/diagnose_benchmark_filed.py
napxplorer/benchmark/naxplorer_benchmark.py
napxplorer/benchmark/plot_grouped_barplot.py
napxplorer/benchmark/plot_upSetplot.py
napxplorer/benchmark/run_af3_benchmark.py
napxplorer/benchmark/run_rf2na_benchmark.py
napxplorer/benchmark/stats_on_benchamrks.py
napxplorer/benchmark/surface_residues_vs_naccess/analyze_curvature_interaction_importance.py
napxplorer/benchmark/surface_residues_vs_naccess/benchmark_surface_residues.py
napxplorer/benchmark/surface_residues_vs_naccess/capture_tutorial_screenshots.py
napxplorer/benchmark/surface_residues_vs_naccess/comprehensive_curvature_benchmark.py
napxplorer/benchmark/surface_residues_vs_naccess/create_surface_curvature_documentation.py
napxplorer/benchmark/surface_residues_vs_naccess/generate_manuscript_surface_figures.py
napxplorer/benchmark/surface_residues_vs_naccess/prepare_supplementary_comparison.py
napxplorer/core/__init__.py
napxplorer/core/base.py
napxplorer/core/capabilities.py
napxplorer/core/component.py
napxplorer/core/constants.py
napxplorer/core/exceptions.py
napxplorer/core/logger.py
napxplorer/core/metadata.py
napxplorer/core/registry.py
napxplorer/core/requirements.py
napxplorer/core/settings.py
napxplorer/core/typing.py
napxplorer/data/__init__.py
napxplorer/data/ch_isolated_pi.json
napxplorer/data/electrostatic.json
napxplorer/data/interaction_caps_xtb_modified_v2.py
napxplorer/data/mmcif_clean_reader.py
napxplorer/data/naxplorer_additional_pi_defs.json
napxplorer/data/renaming.py
napxplorer/data/rna_residue_defs.json
napxplorer/data/surface.xyz
napxplorer/data/weak_ch_donor.json
napxplorer/helper_coco2/gen_coco2_json_input.py
napxplorer/interactions/__init__.py
napxplorer/interactions/run_clapnac_sweep.py
napxplorer/interactions/run_coco2_parallel.py
napxplorer/interactions/run_napxplorer_parallel.py
napxplorer/interactions/run_snap_parallel.py
napxplorer/models/data.py
napxplorer/modifications/NAPxplorer_modifications_interactions.py
napxplorer/modifications/__init__.py
napxplorer/modifications/build_webpage_assets.py
napxplorer/modifications/catalog.py
napxplorer/modifications/ccd_parser.py
napxplorer/modifications/describe.py
napxplorer/modifications/fetch_modified_nucleotides_data.py
napxplorer/modifications/fetch_modified_structures.py
napxplorer/modifications/interaction_rules.py
napxplorer/modifications/panel_builder.py
napxplorer/modifications/pdb_metadata.py
napxplorer/modifications/plot_parent_base_to_modified_nucleotides.py
napxplorer/modifications/refresh_catalog_status.py
napxplorer/modifications/registry.py
napxplorer/modifications/render_representatives.py
napxplorer/modifications/renderer_2d.py
napxplorer/modifications/representatives.py
napxplorer/modifications/run_all_modified_structures_gxtb.py
napxplorer/modifications/run_pipeline.py
napxplorer/parsers/NAPxplorer_parser.py
napxplorer/parsers/NAenergy.py
napxplorer/parsers/NAwrapping.py
napxplorer/parsers/__init__.py
napxplorer/parsers/base.py
napxplorer/parsers/bpfind.py
napxplorer/parsers/claPNAC.py
napxplorer/parsers/coco2.py
napxplorer/parsers/dssr.py
napxplorer/parsers/extractElements_PDB_CIF.py
napxplorer/parsers/hbplus.py
napxplorer/parsers/mmcifReader.py
napxplorer/parsers/naccess.py
napxplorer/parsers/pymolParser.py
napxplorer/parsers/snap.py
napxplorer/plugins/PyMol_render_figures.py
napxplorer/utils/mmcif_clean_reader.py
napxplorer/utils/renaming.py
napxplorer/visualization/__init__.py
napxplorer/visualization/chimerax_renderer.py
napxplorer/visualization/colors.py
napxplorer/visualization/generate_previews.py
napxplorer/visualization/molstar_renderer.py
napxplorer/visualization/ngl_renderer.py
napxplorer/visualization/presets.py
napxplorer/visualization/profile.py
napxplorer/visualization/pymol_renderer.py
napxplorer/visualization/pymol_utils.py
napxplorer/visualization/registry.py
napxplorer/visualization/renderer.py
napxplorer/visualization/styles.py
napxplorer/visualization/use.py
scripts/NAPxplorer.py
scripts/NAxplorer.py
scripts/NAxplorer_dummyDebug.py
scripts/__init__.py
scripts/benchmark_prdbv3_validation.py
scripts/capture_focused_molstar.py
scripts/capture_tutorial_screenshots.py
scripts/capture_water_bridge_zoom.py