tqdm
PyYAML
scikit-learn
numpy<2
pandas<=2.2.2
requests
pyarrow==20.0.0
fastparquet
openpyxl

[base_models]
torch==2.2.2
transformers==4.38.0
flash-attn==2.7.4.post1
mamba-ssm==1.2.0.post1
rna-fm==0.2.2
accelerate==1.8.1
multimolecule==0.0.7
evo-model==0.4
borzoi-pytorch==0.4.2
enformer-pytorch==0.8.10
ViennaRNA==2.7.0

[dev]
mypy
flake8
flake8-docstrings
pytest
types-requests
types-PyYAML
genomekit==7.2.1
