Metadata-Version: 2.4
Name: looper
Version: 2.1.1
Summary: A pipeline submission engine that parses sample inputs and submits pipelines for each sample.
Project-URL: Homepage, https://github.com/pepkit/looper
Author: Nathan Sheffield, Vince Reuter, Michal Stolarczyk, Johanna Klughammer, Andre Rendeiro, Donald Campbell
License-Expression: BSD-2-Clause
License-File: LICENSE.txt
Keywords: bioinformatics,ngs,sequencing
Classifier: Development Status :: 4 - Beta
Classifier: License :: OSI Approved :: BSD License
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: Python :: 3.13
Classifier: Programming Language :: Python :: 3.14
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.10
Requires-Dist: colorama>=0.3.9
Requires-Dist: eido>=0.2.4
Requires-Dist: jinja2
Requires-Dist: logmuse>=0.2.0
Requires-Dist: pandas>=2.0.2
Requires-Dist: pephubclient>=0.4.0
Requires-Dist: peppy>=0.40.6
Requires-Dist: pipestat>=0.12.0a1
Requires-Dist: psutil
Requires-Dist: pydantic-settings>=2.0.0
Requires-Dist: pyyaml>=3.12
Requires-Dist: rich>=9.10.0
Requires-Dist: ubiquerg>=0.8.1
Requires-Dist: yacman>=0.9.5
Provides-Extra: api
Requires-Dist: fastapi>=0.100.0; extra == 'api'
Requires-Dist: uvicorn>=0.22.0; extra == 'api'
Provides-Extra: test
Requires-Dist: gitpython; extra == 'test'
Requires-Dist: hypothesis>=6.84.3; extra == 'test'
Requires-Dist: mock; extra == 'test'
Requires-Dist: psutil; extra == 'test'
Requires-Dist: pytest; extra == 'test'
Requires-Dist: pytest-cov; extra == 'test'
Requires-Dist: pytest-remotedata; extra == 'test'
Description-Content-Type: text/markdown

# <img src="looper_logo.svg" alt="looper logo" height="70">

![Run pytests](https://github.com/pepkit/looper/workflows/Run%20pytests/badge.svg)
[![PEP compatible](http://pepkit.github.io/img/PEP-compatible-green.svg)](http://pepkit.github.io)
[![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)


`Looper` is a pipeline submission engine. The typical use case is to run a bioinformatics pipeline across many different input samples. Instructions are in the [documentation](http://looper.databio.org/).
