LICENSE
README.md
pyproject.toml
src/pytheas1/__init__.py
src/pytheas1/__main__.py
src/pytheas1/_compat.py
src/pytheas1/cli.py
src/pytheas1/gui.py
src/pytheas1/gui_spec.py
src/pytheas1/params.py
src/pytheas1/stages.py
src/pytheas1.egg-info/PKG-INFO
src/pytheas1.egg-info/SOURCES.txt
src/pytheas1.egg-info/dependency_links.txt
src/pytheas1.egg-info/entry_points.txt
src/pytheas1.egg-info/requires.txt
src/pytheas1.egg-info/top_level.txt
src/pytheas1/data/RNAmodifications_template.txt
src/pytheas1/data/charges_MS1.txt
src/pytheas1/data/charges_MS2.txt
src/pytheas1/data/nts_heavy.xlsx
src/pytheas1/data/nts_light.xlsx
src/pytheas1/data/Charge_tables/QTOF/charges_MS1.txt
src/pytheas1/data/Charge_tables/QTOF/charges_MS2.txt
src/pytheas1/data/Charge_tables/QTOF_and_other_spectrometers/charges_MS1.txt
src/pytheas1/data/Charge_tables/QTOF_and_other_spectrometers/charges_MS2.txt
src/pytheas1/data/Charge_tables/QTOF_training_set_only/charges_MS1_calibration.txt
src/pytheas1/data/Charge_tables/QTOF_training_set_only/charges_MS2_calibration.txt
src/pytheas1/data/js/color_tables.js
src/pytheas1/data/js/mapping_output.js
src/pytheas1/data/js/sorttable.js
src/pytheas1/data/js/visualize_spectra.js
src/pytheas1/final_report/__init__.py
src/pytheas1/final_report/final_report_library.py
src/pytheas1/in_silico_digestion/__init__.py
src/pytheas1/in_silico_digestion/calc_mass_gui.py
src/pytheas1/in_silico_digestion/consolidate_gui.py
src/pytheas1/in_silico_digestion/consolidate_tools.py
src/pytheas1/in_silico_digestion/decoy_gui.py
src/pytheas1/in_silico_digestion/enzyme_gui.py
src/pytheas1/in_silico_digestion/modify_gui.py
src/pytheas1/matching_scoring/__init__.py
src/pytheas1/matching_scoring/match_library.py
src/pytheas1/matching_scoring/stats_tools.py
src/pytheas1/sequence_mapping/__init__.py
src/pytheas1/sequence_mapping/mapping_library.py
src/pytheas1/statistical_analysis/__init__.py
src/pytheas1/statistical_analysis/statistics_library.py
src/pytheas1/visualization_spectra/__init__.py
src/pytheas1/visualization_spectra/visualization_library.py
tests/test_golden.py
tests/test_gui.py
tests/test_package.py