LICENSE
MANIFEST.in
README.md
pyproject.toml
proteoflux/__init__.py
proteoflux/cli.py
proteoflux/main.py
proteoflux.egg-info/PKG-INFO
proteoflux.egg-info/SOURCES.txt
proteoflux.egg-info/dependency_links.txt
proteoflux.egg-info/entry_points.txt
proteoflux.egg-info/requires.txt
proteoflux.egg-info/top_level.txt
proteoflux/analysis/__init__.py
proteoflux/analysis/adata_schema.py
proteoflux/analysis/clustering.py
proteoflux/analysis/limma_pipeline.py
proteoflux/analysis/missingness.py
proteoflux/analysis/nrsc.py
proteoflux/analysis/statisticaltester.py
proteoflux/analysis/stats_ops.py
proteoflux/analysis/validation.py
proteoflux/dataset/__init__.py
proteoflux/dataset/intermediateresults.py
proteoflux/dataset/preprocessresults.py
proteoflux/export/__init__.py
proteoflux/export/de_exporter.py
proteoflux/export/pdf_report_exporter.py
proteoflux/templates/__init__.py
proteoflux/templates/diann-peptidomics.yaml
proteoflux/templates/diann-proteomics.yaml
proteoflux/templates/fragpipe-peptidomics.yaml
proteoflux/templates/fragpipe-proteomics.yaml
proteoflux/templates/spectronaut-peptidomics.yaml
proteoflux/templates/spectronaut-phosphoproteomics.yaml
proteoflux/templates/spectronaut-proteomics.yaml
proteoflux/utils/__init__.py
proteoflux/utils/analysis_type.py
proteoflux/utils/cli_setup.py
proteoflux/utils/compact_repr.py
proteoflux/utils/harmonizer.py
proteoflux/utils/ptm_map.py
proteoflux/utils/semantics.py
proteoflux/utils/sequence_ops.py
proteoflux/utils/utils.py
proteoflux/workflow/__init__.py
proteoflux/workflow/dataset.py
proteoflux/workflow/imputer_factory.py
proteoflux/workflow/peptide_tables.py
proteoflux/workflow/preprocessing.py
proteoflux/workflow/imputers/__init__.py
proteoflux/workflow/imputers/lc_conmed_imputer.py
proteoflux/workflow/imputers/min_imputers.py
proteoflux/workflow/imputers/nsknnimputer.py
proteoflux/workflow/imputers/simpleimputers.py
proteoflux/workflow/imputers/tnknnimputer.py
proteoflux/workflow/normalizers/__init__.py
proteoflux/workflow/normalizers/regression_normalization.py
proteoflux/workflow/rollup/__init__.py
proteoflux/workflow/rollup/directlfq.py
proteoflux/workflow/rollup/directlfq_config.py
proteoflux/workflow/rollup/robust_regression.py