LICENSE
README.md
pyproject.toml
coana/__init__.py
coana.egg-info/PKG-INFO
coana.egg-info/SOURCES.txt
coana.egg-info/dependency_links.txt
coana.egg-info/entry_points.txt
coana.egg-info/requires.txt
coana.egg-info/top_level.txt
oligomer_analysis/__init__.py
oligomer_analysis/__main__.py
oligomer_analysis/cache_io.py
oligomer_analysis/chemistry.py
oligomer_analysis/cli.py
oligomer_analysis/commitment.py
oligomer_analysis/compare.py
oligomer_analysis/convergence.py
oligomer_analysis/debug_tools.py
oligomer_analysis/export_utils.py
oligomer_analysis/graph_tools.py
oligomer_analysis/heatmaps.py
oligomer_analysis/hotspots.py
oligomer_analysis/interactive.py
oligomer_analysis/lineage.py
oligomer_analysis/lineage_metrics.py
oligomer_analysis/lineage_plots.py
oligomer_analysis/llps.py
oligomer_analysis/mechanism.py
oligomer_analysis/metrics.py
oligomer_analysis/models.py
oligomer_analysis/monitor.py
oligomer_analysis/network.py
oligomer_analysis/plotting_common.py
oligomer_analysis/precompute.py
oligomer_analysis/predictors.py
oligomer_analysis/publication_figures.py
oligomer_analysis/report.py
oligomer_analysis/species.py
oligomer_analysis/system_analysis.py
oligomer_analysis/timeline.py
oligomer_analysis/tracking.py
oligomer_analysis/coanapure/__init__.py
oligomer_analysis/coanapure/benchmark.py
oligomer_analysis/coanapure/gro_io.py
oligomer_analysis/coanapure/neighbors.py
oligomer_analysis/coanapure/pbc.py
oligomer_analysis/coanapure/pdb_io.py
oligomer_analysis/coanapure/precompute_pure.py
oligomer_analysis/coanapure/selection.py
oligomer_analysis/coanapure/trr_io.py
oligomer_analysis/coanapure/xtc_io.py
oligomer_analysis/templates/timeline_template.html
tests/test_cli_report.py
tests/test_coana_name.py
tests/test_coanapure.py
tests/test_coanapure_v11.py
tests/test_coanapure_v12.py
tests/test_lineage_synthetic.py
tests/test_llps.py
tests/test_metrics_pbc.py
tests/test_species.py
tests/test_timeline.py
tests/test_tracking_follow.py
tests/test_v2_modules.py
tests/test_v31_helpers.py
tests/test_v34_features.py
tests/test_v351_regressions.py
tests/test_v35_branch_local.py
tests/test_v36_box_guard.py
tests/test_v36_merge.py