LICENSE
MANIFEST.in
README.md
pyproject.toml
requirements.txt
setup.cfg
setup.py
assets/readme/logo.jpg
src/crisprhawk/__init__.py
src/crisprhawk/__main__.py
src/crisprhawk/annotation.py
src/crisprhawk/bedfile.py
src/crisprhawk/bitset.py
src/crisprhawk/candidate_guides.py
src/crisprhawk/config_crispritz.py
src/crisprhawk/converter.py
src/crisprhawk/coordinate.py
src/crisprhawk/crisprhawk.py
src/crisprhawk/crisprhawk_argparse.py
src/crisprhawk/crisprhawk_error.py
src/crisprhawk/crisprhawk_version.py
src/crisprhawk/crisprme_data.py
src/crisprhawk/encoder.py
src/crisprhawk/exception_handlers.py
src/crisprhawk/graphical_reports.py
src/crisprhawk/guide.py
src/crisprhawk/haplotype.py
src/crisprhawk/haplotypes.py
src/crisprhawk/offtarget.py
src/crisprhawk/offtargets.py
src/crisprhawk/pam.py
src/crisprhawk/region.py
src/crisprhawk/region_constructor.py
src/crisprhawk/reports.py
src/crisprhawk/scoring.py
src/crisprhawk/search_guides.py
src/crisprhawk/search_offtargets.py
src/crisprhawk/sequence.py
src/crisprhawk/utils.py
src/crisprhawk/variant.py
src/crisprhawk.egg-info/PKG-INFO
src/crisprhawk.egg-info/SOURCES.txt
src/crisprhawk.egg-info/dependency_links.txt
src/crisprhawk.egg-info/entry_points.txt
src/crisprhawk.egg-info/not-zip-safe
src/crisprhawk.egg-info/requires.txt
src/crisprhawk.egg-info/top_level.txt
src/crisprhawk/config/config.json
src/crisprhawk/scores/__init__.py
src/crisprhawk/scores/crisprhawk_scores.py
src/crisprhawk/scores/azimuth/FC_plus_RES_withPredictions.csv
src/crisprhawk/scores/azimuth/LICENSE.txt
src/crisprhawk/scores/azimuth/__init__.py
src/crisprhawk/scores/azimuth/cli_run_model.py
src/crisprhawk/scores/azimuth/cluster_job.py
src/crisprhawk/scores/azimuth/corrstats.py
src/crisprhawk/scores/azimuth/load_data.py
src/crisprhawk/scores/azimuth/local_multiprocessing.py
src/crisprhawk/scores/azimuth/metrics.py
src/crisprhawk/scores/azimuth/model_comparison.py
src/crisprhawk/scores/azimuth/model_comparison_py38.py
src/crisprhawk/scores/azimuth/predict.py
src/crisprhawk/scores/azimuth/saved_models.zip
src/crisprhawk/scores/azimuth/util.py
src/crisprhawk/scores/azimuth/data/FC_plus_RES_withPredictions.csv
src/crisprhawk/scores/azimuth/data/V1_data.xlsx
src/crisprhawk/scores/azimuth/data/V1_suppl_data.txt
src/crisprhawk/scores/azimuth/data/V2_data.xlsx
src/crisprhawk/scores/azimuth/features/__init__.py
src/crisprhawk/scores/azimuth/features/featurization.py
src/crisprhawk/scores/azimuth/features/microhomology.py
src/crisprhawk/scores/azimuth/models/DNN.py
src/crisprhawk/scores/azimuth/models/GP.py
src/crisprhawk/scores/azimuth/models/__init__.py
src/crisprhawk/scores/azimuth/models/baselines.py
src/crisprhawk/scores/azimuth/models/ensembles.py
src/crisprhawk/scores/azimuth/models/gpy_ssk.py
src/crisprhawk/scores/azimuth/models/regression.py
src/crisprhawk/scores/azimuth/models/ssk.py
src/crisprhawk/scores/cfdscore/__init__.py
src/crisprhawk/scores/cfdscore/cfdscore.py
src/crisprhawk/scores/cfdscore/models.zip
src/crisprhawk/scores/deepCpf1/__init__.py
src/crisprhawk/scores/deepCpf1/seqdeepcpf1.py
src/crisprhawk/scores/deepCpf1/weights.zip
src/crisprhawk/scores/elevation/CRISPR.zip
src/crisprhawk/scores/elevation/__init__.py
src/crisprhawk/scores/elevation/aggregation.py
src/crisprhawk/scores/elevation/dnase.py
src/crisprhawk/scores/elevation/features.py
src/crisprhawk/scores/elevation/load_data.py
src/crisprhawk/scores/elevation/metrics.py
src/crisprhawk/scores/elevation/model_comparison.py
src/crisprhawk/scores/elevation/models.py
src/crisprhawk/scores/elevation/models.zip
src/crisprhawk/scores/elevation/options.py
src/crisprhawk/scores/elevation/prediction_pipeline.py
src/crisprhawk/scores/elevation/settings.py
src/crisprhawk/scores/elevation/settings_template.py
src/crisprhawk/scores/elevation/stacker.py
src/crisprhawk/scores/elevation/util.py
src/crisprhawk/scores/elevation/cmds/__init__.py
src/crisprhawk/scores/elevation/cmds/command_base.py
src/crisprhawk/scores/elevation/cmds/fit.py
src/crisprhawk/scores/elevation/cmds/fixtures.py
src/crisprhawk/scores/elevation/cmds/predict.py
src/crisprhawk/scores/mhscore/microhomology.py
tests/test_annotation.py
tests/test_bedfile.py
tests/test_bitset.py
tests/test_candidate_guides.py
tests/test_converter.py
tests/test_coordinate.py
tests/test_crisprme_data.py
tests/test_encoder.py
tests/test_guide.py
tests/test_haplotype.py
tests/test_haplotypes.py
tests/test_offtarget.py
tests/test_offtargets.py
tests/test_pam.py
tests/test_region.py
tests/test_region_constructor.py
tests/test_reports.py
tests/test_scoring.py
tests/test_search_guides.py
tests/test_utils.py
tests/test_variant.py