Index

_

__getitem__() (cell_attn.cell_trajectory_data_utils.cellTrajectoriesDataset method) (cell_attn.cellTrajectoriesDataset method) (cell_trajectory_data_utils-checkpoint.cellTrajectoriesDataset method) __init__-checkpoint module

__len__() (cell_attn.cell_trajectory_data_utils.cellTrajectoriesDataset method) (cell_attn.cellTrajectoriesDataset method) (cell_trajectory_data_utils-checkpoint.cellTrajectoriesDataset method) __version__ (in module __init__-checkpoint) (in module cell_attn)

C

cell_attn module cell_attn.cell_trajectory_data_utils module cell_attn.model_definition_utils module cell_attn.model_evaluation_utils module cell_attn.train_model module cell_attn.training_utils module cell_trajectory_data_utils-checkpoint module

cellTrajectoriesDataset (class in cell_attn) (class in cell_attn.cell_trajectory_data_utils) (class in cell_trajectory_data_utils-checkpoint) compute_weights() (cell_attn.model_definition_utils.velocity_predictor method) (model_definition_utils-checkpoint.velocity_predictor method) create_data_from_trajectories() (in module cell_attn) (in module cell_attn.cell_trajectory_data_utils) (in module cell_trajectory_data_utils-checkpoint) create_data_from_trajectories_memory_saver() (in module cell_attn.cell_trajectory_data_utils) (in module cell_trajectory_data_utils-checkpoint) create_data_from_trajectories_vanilla() (in module cell_attn.cell_trajectory_data_utils) (in module cell_trajectory_data_utils-checkpoint)

D

device (cell_attn.cell_trajectory_data_utils.cellTrajectoriesDataset attribute) (cell_attn.cellTrajectoriesDataset attribute) (cell_trajectory_data_utils-checkpoint.cellTrajectoriesDataset attribute)

E

ewma() (in module cell_attn.model_evaluation_utils) (in module model_evaluation_utils-checkpoint)

F

fc0 (cell_attn.model_definition_utils.pairwise_function_velocity attribute) (cell_attn.model_definition_utils.weight_function attribute) (model_definition_utils-checkpoint.pairwise_function_velocity attribute) (model_definition_utils-checkpoint.weight_function attribute) fc1 (cell_attn.model_definition_utils.pairwise_function_velocity attribute) (cell_attn.model_definition_utils.weight_function attribute) (model_definition_utils-checkpoint.pairwise_function_velocity attribute) (model_definition_utils-checkpoint.weight_function attribute) fc2 (cell_attn.model_definition_utils.pairwise_function_velocity attribute) (cell_attn.model_definition_utils.weight_function attribute) (model_definition_utils-checkpoint.pairwise_function_velocity attribute) (model_definition_utils-checkpoint.weight_function attribute)

fc3 (cell_attn.model_definition_utils.pairwise_function_velocity attribute) (cell_attn.model_definition_utils.weight_function attribute) (model_definition_utils-checkpoint.pairwise_function_velocity attribute) (model_definition_utils-checkpoint.weight_function attribute) forward() (cell_attn.model_definition_utils.pairwise_function_velocity method) (cell_attn.model_definition_utils.velocity_predictor method) (cell_attn.model_definition_utils.weight_function method) (model_definition_utils-checkpoint.pairwise_function_velocity method) (model_definition_utils-checkpoint.velocity_predictor method) (model_definition_utils-checkpoint.weight_function method)

I

interaction_network (cell_attn.model_definition_utils.velocity_predictor attribute) (model_definition_utils-checkpoint.velocity_predictor attribute)

L

labels (cell_attn.cell_trajectory_data_utils.cellTrajectoriesDataset attribute) (cell_attn.cellTrajectoriesDataset attribute) (cell_trajectory_data_utils-checkpoint.cellTrajectoriesDataset attribute) load_data() (in module cell_attn) (in module cell_attn.model_evaluation_utils) (in module model_evaluation_utils-checkpoint)

load_model() (in module cell_attn) (in module cell_attn.model_evaluation_utils) (in module model_evaluation_utils-checkpoint)

M

model_definition_utils-checkpoint module model_evaluation_utils-checkpoint module module __init__-checkpoint cell_attn cell_attn.cell_trajectory_data_utils cell_attn.model_definition_utils cell_attn.model_evaluation_utils cell_attn.train_model cell_attn.training_utils cell_trajectory_data_utils-checkpoint model_definition_utils-checkpoint model_evaluation_utils-checkpoint train_model-checkpoint training_utils-checkpoint

P

pairwise_function_velocity (class in cell_attn.model_definition_utils) (class in model_definition_utils-checkpoint) plot_alignment_heatmap() (in module cell_attn) (in module cell_attn.model_evaluation_utils) (in module model_evaluation_utils-checkpoint) plot_attention_heatmap() (in module cell_attn) (in module cell_attn.model_evaluation_utils) (in module model_evaluation_utils-checkpoint) plot_attraction_repulsion_heatmap() (in module cell_attn) (in module cell_attn.model_evaluation_utils) (in module model_evaluation_utils-checkpoint)

plot_losses() (in module cell_attn) (in module cell_attn.model_evaluation_utils) (in module model_evaluation_utils-checkpoint) plot_losses_per_epoch() (in module cell_attn) (in module cell_attn.model_evaluation_utils) (in module model_evaluation_utils-checkpoint) plot_weight_function() (in module cell_attn.model_evaluation_utils) (in module model_evaluation_utils-checkpoint)

R

radial_weight_plot() (in module cell_attn) (in module cell_attn.model_evaluation_utils) (in module model_evaluation_utils-checkpoint)

T

test_loop() (in module cell_attn.training_utils) (in module training_utils-checkpoint) train_deep_attention_network() (in module cell_attn) (in module cell_attn.train_model) (in module train_model-checkpoint) train_loop() (in module cell_attn.training_utils) (in module training_utils-checkpoint)

train_model-checkpoint module training_utils-checkpoint module trajectories (cell_attn.cell_trajectory_data_utils.cellTrajectoriesDataset attribute) (cell_attn.cellTrajectoriesDataset attribute) (cell_trajectory_data_utils-checkpoint.cellTrajectoriesDataset attribute)

V

velocity_predictor (class in cell_attn.model_definition_utils) (class in model_definition_utils-checkpoint)

W

weight_distance_plot() (in module cell_attn) (in module cell_attn.model_evaluation_utils) (in module model_evaluation_utils-checkpoint)

weight_function (class in cell_attn.model_definition_utils) (class in model_definition_utils-checkpoint) weight_network (cell_attn.model_definition_utils.velocity_predictor attribute) (model_definition_utils-checkpoint.velocity_predictor attribute)