alembic==1.18.4
annotated-doc==0.0.4
annotated-types==0.7.0
anyio==4.13.0
appdirs==1.4.4
argparse-dataclass==2.0.0
asttokens==3.0.1
attrs==26.1.0
black==26.3.1
certifi==2026.2.25
cfgv==3.5.0
charset-normalizer==3.4.7
click==8.3.2
conda-inject==1.3.2
configargparse==1.7.5
connection-pool==0.0.3
contourpy==1.3.3
coverage==7.13.5
cycler==0.12.1
decorator==5.2.1
distlib==0.4.0
docrep==0.3.2
docutils==0.22.4
dpath==2.2.0
executing==2.2.1
fastjsonschema==2.21.2
filelock==3.25.2
fonttools==4.62.1
gitdb==4.0.12
gitpython==3.1.46
greenlet==3.3.2
h11==0.16.0
httpcore==1.0.9
httpx==0.28.1
humanfriendly==10.0
identify==2.6.18
idna==3.11
immutables==0.21
inflect==7.5.0
iniconfig==2.3.0
ipython==9.10.1
ipython-pygments-lexers==1.1.1
jedi==0.19.2
jinja2==3.1.6
joblib==1.5.3
jsonschema==4.26.0
jsonschema-specifications==2025.9.1
jupyter-core==5.9.1
kiwisolver==1.5.0
librt==0.8.1
llvmlite==0.47.0
loguru==0.7.3
mako==1.3.10
markdown-it-py==4.0.0
markupsafe==3.0.3
matplotlib==3.10.8
matplotlib-inline==0.2.1
mdurl==0.1.2
more-itertools==11.0.1
mypy==1.20.0
mypy-extensions==1.1.0
nbformat==5.10.4
networkx==3.6.1
nodeenv==1.10.0
numba==0.65.0
numpy==2.4.4
omnipath==1.0.12
packaging==25.0
pandas==3.0.2
parso==0.8.6
pathspec==1.0.4
pexpect==4.9.0
pillow==12.2.0
platformdirs==4.9.4
pluggy==1.6.0
pre-commit==4.5.1
prompt-toolkit==3.0.52
psutil==7.2.2
psycopg2-binary==2.9.11
ptyprocess==0.7.0
pulp==3.3.0
pure-eval==0.2.3
pyarrow==23.0.1
pydantic==2.12.5
pydantic-core==2.41.5
pydantic-settings==2.13.1
pygments==2.20.0
pynetphorest==0.1.3
-e file:///home/abhinavmishra/git/pynetworkin
pyparsing==3.3.2
pytest==9.0.2
pytest-asyncio==1.3.0
pytest-cov==7.1.0
python-dateutil==2.9.0.post0
python-discovery==1.2.1
python-dotenv==1.2.2
pytokens==0.4.1
pyyaml==6.0.3
referencing==0.37.0
requests==2.33.1
rich==14.3.3
rpds-py==0.30.0
ruff==0.15.9
scikit-learn==1.8.0
scipy==1.17.1
shellingham==1.5.4
six==1.17.0
smart-open==7.5.1
smmap==5.0.3
snakemake==9.19.0
snakemake-interface-common==1.23.0
snakemake-interface-executor-plugins==9.4.0
snakemake-interface-logger-plugins==2.0.1
snakemake-interface-report-plugins==1.3.0
snakemake-interface-scheduler-plugins==2.0.2
snakemake-interface-storage-plugins==4.4.1
sqlalchemy==2.0.49
sqlmodel==0.0.37
stack-data==0.6.3
tabulate==0.10.0
tenacity==9.1.4
threadpoolctl==3.6.0
throttler==1.2.3
tqdm==4.67.3
traitlets==5.14.3
typeguard==4.5.1
typer==0.24.1
typing-extensions==4.15.0
typing-inspection==0.4.2
uniprot-id-mapper==1.1.5
urllib3==2.6.3
virtualenv==21.2.0
wcwidth==0.6.0
wrapt==2.1.2
yte==1.9.4
