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.prettierignore
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LICENSE.txt
README.md
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environment.yaml
pyproject.toml
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.github/workflows/python-testing.yml
.github/workflows/teardown.yml
assets/seqerakit.png
assets/seqerakit.svg
examples/python/launch_hello_world.py
examples/yaml/seqerakit-e2e.yml
examples/yaml/compute-envs/seqera_aws_ireland_fusionv2_nvme.json
examples/yaml/compute-envs/seqera_aws_virginia_fusionv2_nvme.json
examples/yaml/compute-envs/seqera_azure_virginia.json
examples/yaml/compute-envs/seqera_gcp_finland.json
examples/yaml/datasets/rnaseq_samples.csv
examples/yaml/datasets/sarek_samples.csv
examples/yaml/datasets/sentieon_samples.csv
examples/yaml/datasets/viralrecon_illumina_samples.csv
examples/yaml/datasets/viralrecon_nanopore_samples.csv
examples/yaml/e2e/actions.yml
examples/yaml/e2e/compute-envs.yml
examples/yaml/e2e/credentials.yml
examples/yaml/e2e/datasets.yml
examples/yaml/e2e/labels.yml
examples/yaml/e2e/members.yml
examples/yaml/e2e/organizations.yml
examples/yaml/e2e/participants.yml
examples/yaml/e2e/pipelines.yml
examples/yaml/e2e/secrets.yml
examples/yaml/e2e/teams.yml
examples/yaml/e2e/workspaces.yml
examples/yaml/pipelines/nextflow.config
examples/yaml/pipelines/nf-core-sarek_pipeline.json
examples/yaml/pipelines/nf_core_rnaseq_params.yml
examples/yaml/pipelines/nf_core_rnaseq_pipeline.json
examples/yaml/pipelines/nf_core_viralrecon_illumina_params.yml
examples/yaml/pipelines/nf_core_viralrecon_illumina_pipeline.json
examples/yaml/pipelines/nf_core_viralrecon_nanopore_pipeline.json
examples/yaml/pipelines/nf_sentieon_pipeline.json
examples/yaml/pipelines/pre_run.txt
seqerakit/__init__.py
seqerakit/cli.py
seqerakit/computeenvs.py
seqerakit/helper.py
seqerakit/on_exists.py
seqerakit/overwrite.py
seqerakit/pipelines.py
seqerakit/seqeraplatform.py
seqerakit/utils.py
seqerakit.egg-info/PKG-INFO
seqerakit.egg-info/SOURCES.txt
seqerakit.egg-info/dependency_links.txt
seqerakit.egg-info/entry_points.txt
seqerakit.egg-info/not-zip-safe
seqerakit.egg-info/requires.txt
seqerakit.egg-info/top_level.txt
templates/actions.yml
templates/compute-envs.yml
templates/credentials.yml
templates/data-links.yml
templates/datasets.yml
templates/labels.yml
templates/launch.yml
templates/members.yml
templates/organizations.yml
templates/participants.yml
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templates/studios.yml
templates/teams.yml
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tests/e2e/aws-e2e.yml
tests/unit/__init__.py
tests/unit/test_helper.py
tests/unit/test_overwrite.py
tests/unit/test_seqeraplatform.py
tests/unit/test_subcommands.py