examples/output/
project
project/
src/schema/mixs.yaml

*/my_schema.*
.DS_Store
docs/*md
docs/types/
local/
neon_cache.sqlite
notebooks/neon_cache.sqlite
site/
tdbcontent
tdbcontent/

src/scripts/cachedir/

# PyCharm project config
.idea/

*.old

# emacs backup files
*~

/docs/
/project/docs/
/tmp/

# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# C extensions
*.so

# Distribution / packaging
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
pip-wheel-metadata/
share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.nox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
*.py,cover
.hypothesis/
.pytest_cache/

# Translations
*.mo
*.pot

# Django stuff:
*.log
local_settings.py
db.sqlite3
db.sqlite3-journal

# Flask stuff:
instance/
.webassets-cache

# Scrapy stuff:
.scrapy

# Sphinx documentation
docs/_build/

# PyBuilder
target/

# Jupyter Notebook
.ipynb_checkpoints

# IPython
profile_default/
ipython_config.py

# pyenv
.python-version


# PEP 582; used by e.g. github.com/David-OConnor/pyflow
__pypackages__/

# Celery stuff
celerybeat-schedule
celerybeat.pid

# SageMath parsed files
*.sage.py

# Environments
.env
.venv
env/
venv/
ENV/
env.bak/
venv.bak/

# Spyder project settings
.spyderproject
.spyproject

# Rope project settings
.ropeproject

# mkdocs documentation
/site

# Vim swap files
*.swp
*.swo

# MS Office temporary files
~$*

# LibreOffice lock files
.~lock.*#

# mypy
.mypy_cache/
.dmypy.json
dmypy.json

# Pyre type checker
.pyre/

# ruff
.ruff_cache/

# Poetry lock file: this is a uv project (uv.lock is the tracked lock) since
# https://github.com/microbiomedata/nmdc-schema/issues/2761. Ignore a poetry.lock
# left by running Poetry here out of habit.
poetry.lock

# AI coding tools
.claude/
.aider*
.copilot/
.github/copilot-instructions.md
AGENTS.md
