LICENSE
README.md
pyproject.toml
setup.py
edsnlp/__init__.py
edsnlp/_version.py
edsnlp/evaluate.py
edsnlp/extensions.py
edsnlp/language.py
edsnlp/package.py
edsnlp/patch_spacy.py
edsnlp/reducers.py
edsnlp/train.py
edsnlp/tune.py
edsnlp.egg-info/PKG-INFO
edsnlp.egg-info/SOURCES.txt
edsnlp.egg-info/dependency_links.txt
edsnlp.egg-info/entry_points.txt
edsnlp.egg-info/requires.txt
edsnlp.egg-info/top_level.txt
edsnlp/connectors/__init__.py
edsnlp/connectors/brat.py
edsnlp/connectors/labeltool.py
edsnlp/connectors/omop.py
edsnlp/core/__init__.py
edsnlp/core/pipeline.py
edsnlp/core/registries.py
edsnlp/core/stream.py
edsnlp/core/torch_component.py
edsnlp/data/__init__.py
edsnlp/data/base.py
edsnlp/data/brat.py
edsnlp/data/conll.py
edsnlp/data/converters.py
edsnlp/data/huggingface_dataset.py
edsnlp/data/json.py
edsnlp/data/pandas.py
edsnlp/data/parquet.py
edsnlp/data/polars.py
edsnlp/data/spark.py
edsnlp/data/standoff.py
edsnlp/matchers/__init__.py
edsnlp/matchers/phrase.cpp
edsnlp/matchers/phrase.pxd
edsnlp/matchers/phrase.pyx
edsnlp/matchers/regex.py
edsnlp/matchers/simstring.py
edsnlp/matchers/utils/__init__.py
edsnlp/matchers/utils/offset.py
edsnlp/matchers/utils/text.py
edsnlp/metrics/__init__.py
edsnlp/metrics/dep_parsing.py
edsnlp/metrics/ner.py
edsnlp/metrics/span_attribute.py
edsnlp/pipes/__init__.py
edsnlp/pipes/base.py
edsnlp/pipes/terminations.py
edsnlp/pipes/core/__init__.py
edsnlp/pipes/core/contextual_matcher/__init__.py
edsnlp/pipes/core/contextual_matcher/contextual_matcher.py
edsnlp/pipes/core/contextual_matcher/factory.py
edsnlp/pipes/core/contextual_matcher/models.py
edsnlp/pipes/core/endlines/__init__.py
edsnlp/pipes/core/endlines/endlines.py
edsnlp/pipes/core/endlines/factory.py
edsnlp/pipes/core/endlines/functional.py
edsnlp/pipes/core/endlines/model.py
edsnlp/pipes/core/matcher/__init__.py
edsnlp/pipes/core/matcher/factory.py
edsnlp/pipes/core/matcher/matcher.py
edsnlp/pipes/core/normalizer/__init__.py
edsnlp/pipes/core/normalizer/factory.py
edsnlp/pipes/core/normalizer/normalizer.py
edsnlp/pipes/core/normalizer/accents/__init__.py
edsnlp/pipes/core/normalizer/accents/accents.py
edsnlp/pipes/core/normalizer/accents/factory.py
edsnlp/pipes/core/normalizer/accents/patterns.py
edsnlp/pipes/core/normalizer/pollution/__init__.py
edsnlp/pipes/core/normalizer/pollution/factory.py
edsnlp/pipes/core/normalizer/pollution/patterns.py
edsnlp/pipes/core/normalizer/pollution/pollution.py
edsnlp/pipes/core/normalizer/quotes/__init__.py
edsnlp/pipes/core/normalizer/quotes/factory.py
edsnlp/pipes/core/normalizer/quotes/patterns.py
edsnlp/pipes/core/normalizer/quotes/quotes.py
edsnlp/pipes/core/normalizer/remove_lowercase/__init__.py
edsnlp/pipes/core/normalizer/remove_lowercase/factory.py
edsnlp/pipes/core/normalizer/spaces/__init__.py
edsnlp/pipes/core/normalizer/spaces/factory.py
edsnlp/pipes/core/normalizer/spaces/spaces.py
edsnlp/pipes/core/sentences/__init__.py
edsnlp/pipes/core/sentences/factory.py
edsnlp/pipes/core/sentences/fast_sentences.cpp
edsnlp/pipes/core/sentences/fast_sentences.pxd
edsnlp/pipes/core/sentences/fast_sentences.pyx
edsnlp/pipes/core/sentences/sentences.py
edsnlp/pipes/core/sentences/terms.py
edsnlp/pipes/core/terminology/__init__.py
edsnlp/pipes/core/terminology/factory.py
edsnlp/pipes/core/terminology/terminology.py
edsnlp/pipes/llm/__init__.py
edsnlp/pipes/llm/async_worker.py
edsnlp/pipes/llm/llm_markup_extractor/__init__.py
edsnlp/pipes/llm/llm_markup_extractor/factory.py
edsnlp/pipes/llm/llm_markup_extractor/llm_markup_extractor.py
edsnlp/pipes/llm/llm_span_qualifier/__init__.py
edsnlp/pipes/llm/llm_span_qualifier/factory.py
edsnlp/pipes/llm/llm_span_qualifier/llm_span_qualifier.py
edsnlp/pipes/misc/__init__.py
edsnlp/pipes/misc/consultation_dates/__init__.py
edsnlp/pipes/misc/consultation_dates/consultation_dates.py
edsnlp/pipes/misc/consultation_dates/factory.py
edsnlp/pipes/misc/consultation_dates/patterns.py
edsnlp/pipes/misc/dates/__init__.py
edsnlp/pipes/misc/dates/dates.py
edsnlp/pipes/misc/dates/factory.py
edsnlp/pipes/misc/dates/models.py
edsnlp/pipes/misc/dates/normalizer.py
edsnlp/pipes/misc/dates/patterns/__init__.py
edsnlp/pipes/misc/dates/patterns/absolute.py
edsnlp/pipes/misc/dates/patterns/current.py
edsnlp/pipes/misc/dates/patterns/duration.py
edsnlp/pipes/misc/dates/patterns/false_positive.py
edsnlp/pipes/misc/dates/patterns/relative.py
edsnlp/pipes/misc/dates/patterns/atomic/__init__.py
edsnlp/pipes/misc/dates/patterns/atomic/days.py
edsnlp/pipes/misc/dates/patterns/atomic/delimiters.py
edsnlp/pipes/misc/dates/patterns/atomic/directions.py
edsnlp/pipes/misc/dates/patterns/atomic/modes.py
edsnlp/pipes/misc/dates/patterns/atomic/months.py
edsnlp/pipes/misc/dates/patterns/atomic/numbers.py
edsnlp/pipes/misc/dates/patterns/atomic/time.py
edsnlp/pipes/misc/dates/patterns/atomic/units.py
edsnlp/pipes/misc/dates/patterns/atomic/years.py
edsnlp/pipes/misc/explode/__init__.py
edsnlp/pipes/misc/explode/explode.py
edsnlp/pipes/misc/quantities/__init__.py
edsnlp/pipes/misc/quantities/factory.py
edsnlp/pipes/misc/quantities/patterns.py
edsnlp/pipes/misc/quantities/quantities.py
edsnlp/pipes/misc/reason/__init__.py
edsnlp/pipes/misc/reason/factory.py
edsnlp/pipes/misc/reason/patterns.py
edsnlp/pipes/misc/reason/reason.py
edsnlp/pipes/misc/sections/__init__.py
edsnlp/pipes/misc/sections/factory.py
edsnlp/pipes/misc/sections/patterns.py
edsnlp/pipes/misc/sections/sections.py
edsnlp/pipes/misc/split/__init__.py
edsnlp/pipes/misc/split/split.py
edsnlp/pipes/misc/tables/__init__.py
edsnlp/pipes/misc/tables/factory.py
edsnlp/pipes/misc/tables/patterns.py
edsnlp/pipes/misc/tables/tables.py
edsnlp/pipes/ner/__init__.py
edsnlp/pipes/ner/adicap/__init__.py
edsnlp/pipes/ner/adicap/adicap.py
edsnlp/pipes/ner/adicap/factory.py
edsnlp/pipes/ner/adicap/models.py
edsnlp/pipes/ner/adicap/patterns.py
edsnlp/pipes/ner/behaviors/__init__.py
edsnlp/pipes/ner/behaviors/alcohol/__init__.py
edsnlp/pipes/ner/behaviors/alcohol/alcohol.py
edsnlp/pipes/ner/behaviors/alcohol/factory.py
edsnlp/pipes/ner/behaviors/alcohol/patterns.py
edsnlp/pipes/ner/behaviors/tobacco/__init__.py
edsnlp/pipes/ner/behaviors/tobacco/factory.py
edsnlp/pipes/ner/behaviors/tobacco/patterns.py
edsnlp/pipes/ner/behaviors/tobacco/tobacco.py
edsnlp/pipes/ner/cim10/__init__.py
edsnlp/pipes/ner/cim10/factory.py
edsnlp/pipes/ner/cim10/patterns.py
edsnlp/pipes/ner/covid/__init__.py
edsnlp/pipes/ner/covid/factory.py
edsnlp/pipes/ner/covid/patterns.py
edsnlp/pipes/ner/disorders/__init__.py
edsnlp/pipes/ner/disorders/base.py
edsnlp/pipes/ner/disorders/terms.py
edsnlp/pipes/ner/disorders/aids/__init__.py
edsnlp/pipes/ner/disorders/aids/aids.py
edsnlp/pipes/ner/disorders/aids/factory.py
edsnlp/pipes/ner/disorders/aids/patterns.py
edsnlp/pipes/ner/disorders/cerebrovascular_accident/__init__.py
edsnlp/pipes/ner/disorders/cerebrovascular_accident/cerebrovascular_accident.py
edsnlp/pipes/ner/disorders/cerebrovascular_accident/factory.py
edsnlp/pipes/ner/disorders/cerebrovascular_accident/patterns.py
edsnlp/pipes/ner/disorders/ckd/__init__.py
edsnlp/pipes/ner/disorders/ckd/ckd.py
edsnlp/pipes/ner/disorders/ckd/factory.py
edsnlp/pipes/ner/disorders/ckd/patterns.py
edsnlp/pipes/ner/disorders/congestive_heart_failure/__init__.py
edsnlp/pipes/ner/disorders/congestive_heart_failure/congestive_heart_failure.py
edsnlp/pipes/ner/disorders/congestive_heart_failure/factory.py
edsnlp/pipes/ner/disorders/congestive_heart_failure/patterns.py
edsnlp/pipes/ner/disorders/connective_tissue_disease/__init__.py
edsnlp/pipes/ner/disorders/connective_tissue_disease/connective_tissue_disease.py
edsnlp/pipes/ner/disorders/connective_tissue_disease/factory.py
edsnlp/pipes/ner/disorders/connective_tissue_disease/patterns.py
edsnlp/pipes/ner/disorders/copd/__init__.py
edsnlp/pipes/ner/disorders/copd/copd.py
edsnlp/pipes/ner/disorders/copd/factory.py
edsnlp/pipes/ner/disorders/copd/patterns.py
edsnlp/pipes/ner/disorders/dementia/__init__.py
edsnlp/pipes/ner/disorders/dementia/dementia.py
edsnlp/pipes/ner/disorders/dementia/factory.py
edsnlp/pipes/ner/disorders/dementia/patterns.py
edsnlp/pipes/ner/disorders/diabetes/__init__.py
edsnlp/pipes/ner/disorders/diabetes/diabetes.py
edsnlp/pipes/ner/disorders/diabetes/factory.py
edsnlp/pipes/ner/disorders/diabetes/patterns.py
edsnlp/pipes/ner/disorders/hemiplegia/__init__.py
edsnlp/pipes/ner/disorders/hemiplegia/factory.py
edsnlp/pipes/ner/disorders/hemiplegia/hemiplegia.py
edsnlp/pipes/ner/disorders/hemiplegia/patterns.py
edsnlp/pipes/ner/disorders/leukemia/__init__.py
edsnlp/pipes/ner/disorders/leukemia/factory.py
edsnlp/pipes/ner/disorders/leukemia/leukemia.py
edsnlp/pipes/ner/disorders/leukemia/patterns.py
edsnlp/pipes/ner/disorders/liver_disease/__init__.py
edsnlp/pipes/ner/disorders/liver_disease/factory.py
edsnlp/pipes/ner/disorders/liver_disease/liver_disease.py
edsnlp/pipes/ner/disorders/liver_disease/patterns.py
edsnlp/pipes/ner/disorders/lymphoma/__init__.py
edsnlp/pipes/ner/disorders/lymphoma/factory.py
edsnlp/pipes/ner/disorders/lymphoma/lymphoma.py
edsnlp/pipes/ner/disorders/lymphoma/patterns.py
edsnlp/pipes/ner/disorders/myocardial_infarction/__init__.py
edsnlp/pipes/ner/disorders/myocardial_infarction/factory.py
edsnlp/pipes/ner/disorders/myocardial_infarction/myocardial_infarction.py
edsnlp/pipes/ner/disorders/myocardial_infarction/patterns.py
edsnlp/pipes/ner/disorders/peptic_ulcer_disease/__init__.py
edsnlp/pipes/ner/disorders/peptic_ulcer_disease/factory.py
edsnlp/pipes/ner/disorders/peptic_ulcer_disease/patterns.py
edsnlp/pipes/ner/disorders/peptic_ulcer_disease/peptic_ulcer_disease.py
edsnlp/pipes/ner/disorders/peripheral_vascular_disease/__init__.py
edsnlp/pipes/ner/disorders/peripheral_vascular_disease/factory.py
edsnlp/pipes/ner/disorders/peripheral_vascular_disease/patterns.py
edsnlp/pipes/ner/disorders/peripheral_vascular_disease/peripheral_vascular_disease.py
edsnlp/pipes/ner/disorders/solid_tumor/__init__.py
edsnlp/pipes/ner/disorders/solid_tumor/factory.py
edsnlp/pipes/ner/disorders/solid_tumor/patterns.py
edsnlp/pipes/ner/disorders/solid_tumor/solid_tumor.py
edsnlp/pipes/ner/drugs/__init__.py
edsnlp/pipes/ner/drugs/factory.py
edsnlp/pipes/ner/drugs/patterns.py
edsnlp/pipes/ner/scores/__init__.py
edsnlp/pipes/ner/scores/base_score.py
edsnlp/pipes/ner/scores/factory.py
edsnlp/pipes/ner/scores/charlson/__init__.py
edsnlp/pipes/ner/scores/charlson/factory.py
edsnlp/pipes/ner/scores/charlson/patterns.py
edsnlp/pipes/ner/scores/elston_ellis/__init__.py
edsnlp/pipes/ner/scores/elston_ellis/factory.py
edsnlp/pipes/ner/scores/elston_ellis/patterns.py
edsnlp/pipes/ner/scores/emergency/__init__.py
edsnlp/pipes/ner/scores/emergency/ccmu/__init__.py
edsnlp/pipes/ner/scores/emergency/ccmu/factory.py
edsnlp/pipes/ner/scores/emergency/ccmu/patterns.py
edsnlp/pipes/ner/scores/emergency/gemsa/__init__.py
edsnlp/pipes/ner/scores/emergency/gemsa/factory.py
edsnlp/pipes/ner/scores/emergency/gemsa/patterns.py
edsnlp/pipes/ner/scores/emergency/priority/__init__.py
edsnlp/pipes/ner/scores/emergency/priority/factory.py
edsnlp/pipes/ner/scores/emergency/priority/patterns.py
edsnlp/pipes/ner/scores/sofa/__init__.py
edsnlp/pipes/ner/scores/sofa/factory.py
edsnlp/pipes/ner/scores/sofa/patterns.py
edsnlp/pipes/ner/scores/sofa/sofa.py
edsnlp/pipes/ner/suicide_attempt/__init__.py
edsnlp/pipes/ner/suicide_attempt/factory.py
edsnlp/pipes/ner/suicide_attempt/patterns.py
edsnlp/pipes/ner/suicide_attempt/suicide_attempt.py
edsnlp/pipes/ner/tnm/__init__.py
edsnlp/pipes/ner/tnm/factory.py
edsnlp/pipes/ner/tnm/model.py
edsnlp/pipes/ner/tnm/patterns.py
edsnlp/pipes/ner/tnm/tnm.py
edsnlp/pipes/ner/umls/__init__.py
edsnlp/pipes/ner/umls/factory.py
edsnlp/pipes/ner/umls/patterns.py
edsnlp/pipes/qualifiers/__init__.py
edsnlp/pipes/qualifiers/base.py
edsnlp/pipes/qualifiers/family/__init__.py
edsnlp/pipes/qualifiers/family/factory.py
edsnlp/pipes/qualifiers/family/family.py
edsnlp/pipes/qualifiers/family/patterns.py
edsnlp/pipes/qualifiers/history/__init__.py
edsnlp/pipes/qualifiers/history/factory.py
edsnlp/pipes/qualifiers/history/history.py
edsnlp/pipes/qualifiers/history/patterns.py
edsnlp/pipes/qualifiers/hypothesis/__init__.py
edsnlp/pipes/qualifiers/hypothesis/factory.py
edsnlp/pipes/qualifiers/hypothesis/hypothesis.py
edsnlp/pipes/qualifiers/hypothesis/patterns.py
edsnlp/pipes/qualifiers/negation/__init__.py
edsnlp/pipes/qualifiers/negation/factory.py
edsnlp/pipes/qualifiers/negation/negation.py
edsnlp/pipes/qualifiers/negation/patterns.py
edsnlp/pipes/qualifiers/reported_speech/__init__.py
edsnlp/pipes/qualifiers/reported_speech/factory.py
edsnlp/pipes/qualifiers/reported_speech/patterns.py
edsnlp/pipes/qualifiers/reported_speech/reported_speech.py
edsnlp/pipes/trainable/__init__.py
edsnlp/pipes/trainable/biaffine_dep_parser/__init__.py
edsnlp/pipes/trainable/biaffine_dep_parser/biaffine_dep_parser.py
edsnlp/pipes/trainable/biaffine_dep_parser/factory.py
edsnlp/pipes/trainable/embeddings/__init__.py
edsnlp/pipes/trainable/embeddings/typing.py
edsnlp/pipes/trainable/embeddings/span_pooler/__init__.py
edsnlp/pipes/trainable/embeddings/span_pooler/factory.py
edsnlp/pipes/trainable/embeddings/span_pooler/span_pooler.py
edsnlp/pipes/trainable/embeddings/text_cnn/__init__.py
edsnlp/pipes/trainable/embeddings/text_cnn/factory.py
edsnlp/pipes/trainable/embeddings/text_cnn/text_cnn.py
edsnlp/pipes/trainable/embeddings/transformer/__init__.py
edsnlp/pipes/trainable/embeddings/transformer/factory.py
edsnlp/pipes/trainable/embeddings/transformer/transformer.py
edsnlp/pipes/trainable/extractive_qa/__init__.py
edsnlp/pipes/trainable/extractive_qa/extractive_qa.py
edsnlp/pipes/trainable/extractive_qa/factory.py
edsnlp/pipes/trainable/layers/__init__.py
edsnlp/pipes/trainable/layers/crf.py
edsnlp/pipes/trainable/layers/metric.py
edsnlp/pipes/trainable/layers/text_cnn.py
edsnlp/pipes/trainable/ner_crf/__init__.py
edsnlp/pipes/trainable/ner_crf/factory.py
edsnlp/pipes/trainable/ner_crf/ner_crf.py
edsnlp/pipes/trainable/span_classifier/__init__.py
edsnlp/pipes/trainable/span_classifier/factory.py
edsnlp/pipes/trainable/span_classifier/span_classifier.py
edsnlp/pipes/trainable/span_linker/__init__.py
edsnlp/pipes/trainable/span_linker/factory.py
edsnlp/pipes/trainable/span_linker/span_linker.py
edsnlp/processing/__init__.py
edsnlp/processing/deprecated_pipe.py
edsnlp/processing/multiprocessing.py
edsnlp/processing/simple.py
edsnlp/processing/spark.py
edsnlp/resources/AVC.csv.gz
edsnlp/resources/adicap.json.gz
edsnlp/resources/cim10.csv.gz
edsnlp/resources/drugs.json
edsnlp/resources/verbs.csv.gz
edsnlp/training/__init__.py
edsnlp/training/loggers.py
edsnlp/training/optimizer.py
edsnlp/training/trainer.py
edsnlp/utils/__init__.py
edsnlp/utils/batching.py
edsnlp/utils/bindings.py
edsnlp/utils/collections.py
edsnlp/utils/deprecation.py
edsnlp/utils/doc_to_text.py
edsnlp/utils/examples.py
edsnlp/utils/extensions.py
edsnlp/utils/file_system.py
edsnlp/utils/filter.py
edsnlp/utils/fuzzy_alignment.py
edsnlp/utils/inclusion.py
edsnlp/utils/lazy_module.py
edsnlp/utils/numbers.py
edsnlp/utils/regex_utils.py
edsnlp/utils/resources.py
edsnlp/utils/span_getters.py
edsnlp/utils/spark_dtypes.py
edsnlp/utils/stream_sentinels.py
edsnlp/utils/torch.py
edsnlp/utils/typing.py
edsnlp/viz/__init__.py
tests/test_docs.py
tests/test_entrypoints.py
tests/test_language.py
tests/test_metrics.py
tests/test_pipeline.py
tests/test_reducers.py
tests/test_span_args.py