LICENSE
README.md
pyproject.toml
cytome/__init__.py
cytome/py.typed
cytome.egg-info/PKG-INFO
cytome.egg-info/SOURCES.txt
cytome.egg-info/dependency_links.txt
cytome.egg-info/entry_points.txt
cytome.egg-info/requires.txt
cytome.egg-info/top_level.txt
cytome/cli/__init__.py
cytome/cli/main.py
cytome/core/__init__.py
cytome/core/dataset.py
cytome/core/embedding.py
cytome/core/entity.py
cytome/core/fragments.py
cytome/core/graph.py
cytome/core/lazy_layer.py
cytome/core/measurement.py
cytome/core/metadata.py
cytome/core/provenance.py
cytome/dataloader/__init__.py
cytome/dataloader/pytorch.py
cytome/index/__init__.py
cytome/index/builder.py
cytome/index/rtree.py
cytome/io/__init__.py
cytome/io/chunk_tuning.py
cytome/io/chunked_io.py
cytome/io/compression.py
cytome/io/convert_anndata.py
cytome/io/convert_cellranger.py
cytome/io/convert_fragments.py
cytome/io/convert_mudata.py
cytome/io/convert_soma.py
cytome/io/export_bigwig.py
cytome/io/gtf_import.py
cytome/io/merge.py
cytome/io/sqlite_engine.py
cytome/io/subset.py
cytome/utils/__init__.py
cytome/utils/genome.py
cytome/utils/modality.py
cytome/utils/regions.py
cytome/utils/validation.py
cytome/utils/versioning.py
tests/test_compression_lz4_required.py
tests/test_compression_roundtrip.py
tests/test_create_force_guard.py
tests/test_export_fragment_chunks.py
tests/test_filter_cells_preserves_annotations.py
tests/test_filter_cells_wal_and_compact.py
tests/test_from_cellranger_modalities.py
tests/test_keep_chroms_filter.py
tests/test_merge_projection_and_fragments.py
tests/test_merge_tiles_and_layers.py
tests/test_to_anndata_modality_scoping.py