AAComposition | index /home/orient/ProPy/AAComposition.py |
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The module is used for computing the composition of amino acids, dipetide and
3-mers (tri-peptide) for a given protein sequence. You can get 8420 descriptors
for a given protein sequence. You can freely use and distribute it. If you hava
any problem, you could contact with us timely!
References:
[1]: Reczko, M. and Bohr, H. (1994) The DEF data base of sequence based protein
fold class predictions. Nucleic Acids Res, 22, 3616-3619.
[2]: Hua, S. and Sun, Z. (2001) Support vector machine approach for protein
subcellular localization prediction. Bioinformatics, 17, 721-728.
[3]:Grassmann, J., Reczko, M., Suhai, S. and Edler, L. (1999) Protein fold class
prediction: new methods of statistical classification. Proc Int Conf Intell Syst Mol
Biol, 106-112.
Authors: Dongsheng Cao and Yizeng Liang.
Date: 2012.3.27
Email: oriental-cds@163.com
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Data | ||
AALetter = ['A', 'R', 'N', 'D', 'C', 'E', 'Q', 'G', 'H', 'I', 'L', 'K', 'M', 'F', 'P', 'S', 'T', 'W', 'Y', 'V'] |