itpseq.Sample.infos#

Sample.infos(html=False)[source]#

Returns a table with information on the NGS reads per replicate.

Parameters:: html (bool) – if True, returns the table as HTML, otherwise as DataFrame (default).

Examples

>>> sample.infos()
          total_sequences  noadaptor  contaminant  lowqual  tooshort  toolong   extra0   extra1   extra2  MAX_LEN
sample.1          8384889     714414         1192   685017    385537  3341987  2308291  2528638  2833546       44
sample.2          9120203     498202         1659   513308    104071  5664107  2673062  2972850  2976089       44
sample.3          8490958    1043590         1328   409697    187746  4004073  2243720  2555783  2647865       44