from kimmdy.parsing import read_top
from kimmdy.topology.topology import Topology
from pathlib import Path
from kimmdy.tools import write_top_as_dot
Visualize Topologies
Hexala
= read_top(Path('../../tests/test_files/test_topology/urea.top'), use_gmx_dir=False)
ala_top = Topology(ala_top)
top
"ala-top.dot") write_top_as_dot(top,