CHANGELOG.md
CONTRIBUTING.md
LICENSE
MANIFEST.in
PLAN.md
README.md
pyproject.toml
docs/AGENT_INTEGRATION.md
docs/ARCHITECTURE.md
docs/HOWTO_DEVCYCLE.md
docs/INSTALL.md
docs/RELEASE.md
docs/RUNBOOK.md
docs/USAGE.md
src/atlassiancli/__init__.py
src/atlassiancli/__main__.py
src/atlassiancli/py.typed
src/atlassiancli/application/__init__.py
src/atlassiancli/application/agent_instructions_analyzer.py
src/atlassiancli/application/agent_response.py
src/atlassiancli/application/dtos.py
src/atlassiancli/application/expert_enhancement_service.py
src/atlassiancli/application/framework_bootstrap.py
src/atlassiancli/application/install_agent.py
src/atlassiancli/application/profile_store.py
src/atlassiancli/application/services.py
src/atlassiancli/application/sop_autogen.py
src/atlassiancli/application/sop_manifest.py
src/atlassiancli/application/sop_runner.py
src/atlassiancli/application/stack_detector.py
src/atlassiancli/application/data/__init__.py
src/atlassiancli/application/data/language_profiles.py
src/atlassiancli/application/framework_services/__init__.py
src/atlassiancli/application/framework_services/create_stories_service.py
src/atlassiancli/application/framework_services/reverse_sync_service.py
src/atlassiancli/application/framework_services/sync_docs_service.py
src/atlassiancli/application/framework_services/verify_stories_service.py
src/atlassiancli/cli/__init__.py
src/atlassiancli/cli/agent_adapter.py
src/atlassiancli/cli/composition_root.py
src/atlassiancli/cli/configure_handler.py
src/atlassiancli/cli/framework_handler.py
src/atlassiancli/cli/handlers.py
src/atlassiancli/cli/main.py
src/atlassiancli/cli/review_handler.py
src/atlassiancli/cli/sop_adapter.py
src/atlassiancli/domain/__init__.py
src/atlassiancli/domain/events.py
src/atlassiancli/domain/models.py
src/atlassiancli/domain/repositories.py
src/atlassiancli/domain/services.py
src/atlassiancli/domain/value_objects.py
src/atlassiancli/domain/framework/__init__.py
src/atlassiancli/domain/framework/config.py
src/atlassiancli/domain/framework/value_objects.py
src/atlassiancli/infrastructure/__init__.py
src/atlassiancli/infrastructure/architecture_analyzer.py
src/atlassiancli/infrastructure/backlog_analyzer.py
src/atlassiancli/infrastructure/codebase_cross_referencer.py
src/atlassiancli/infrastructure/config.py
src/atlassiancli/infrastructure/confluence_client.py
src/atlassiancli/infrastructure/confluence_importer.py
src/atlassiancli/infrastructure/document_analyzer.py
src/atlassiancli/infrastructure/document_importers.py
src/atlassiancli/infrastructure/document_writer.py
src/atlassiancli/infrastructure/domain_services.py
src/atlassiancli/infrastructure/duplicate_detector.py
src/atlassiancli/infrastructure/env_loader.py
src/atlassiancli/infrastructure/expert_enhancement.py
src/atlassiancli/infrastructure/framework_config.py
src/atlassiancli/infrastructure/framework_confluence_client.py
src/atlassiancli/infrastructure/framework_jira_client.py
src/atlassiancli/infrastructure/http_client.py
src/atlassiancli/infrastructure/importers.py
src/atlassiancli/infrastructure/jira_client.py
src/atlassiancli/infrastructure/mappers.py
src/atlassiancli/infrastructure/markdown_formatter.py
src/atlassiancli/infrastructure/story_domain_knowledge.py
src/atlassiancli/infrastructure/yaml_codec.py
src/atlassiancli/templates/README.md
src/atlassiancli/templates/autonomous-dev-system/.editorconfig
src/atlassiancli/templates/autonomous-dev-system/.pre-commit-config.yaml
src/atlassiancli/templates/autonomous-dev-system/INSTALL.md
src/atlassiancli/templates/autonomous-dev-system/README.md
src/atlassiancli/templates/autonomous-dev-system/sonar-project.properties.example
src/atlassiancli/templates/autonomous-dev-system/.github/copilot-instructions.md
src/atlassiancli/templates/autonomous-dev-system/.github/prompts/devcycle.prompt.md
src/atlassiancli/templates/autonomous-dev-system/.github/prompts/thinking-beast-mode.prompt.md
src/atlassiancli/templates/autonomous-dev-system/.vscode/devcycle-config.json
src/atlassiancli/templates/autonomous-dev-system/.vscode/mcp.json
src/atlassiancli/templates/autonomous-dev-system/.vscode/settings.json
src/atlassiancli/templates/autonomous-dev-system/docs/architecture/ARCHITECTURE.md.template
src/atlassiancli/templates/autonomous-dev-system/docs/architecture/SECURITY.md.template
src/atlassiancli/templates/autonomous-dev-system/docs/architecture/ai_safety.md.template
src/atlassiancli/templates/autonomous-dev-system/docs/architecture/data_handling.md.template
src/atlassiancli/templates/autonomous-dev-system/docs/architecture/story_authoring.md.template
src/atlassiancli/templates/autonomous-dev-system/scripts/sop-commit-gate.sh
src/atlassiancli/templates/autonomous-dev-system/scripts/sop-story-check.sh
src/atlassiancli/templates/autonomous-dev-system/sops/01-architecture.sop.md.template
src/atlassiancli/templates/autonomous-dev-system/sops/02-security.sop.md.template
src/atlassiancli/templates/autonomous-dev-system/sops/03-code-quality.sop.md.template
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src/atlassiancli/templates/autonomous-dev-system/sops/05-logging.sop.md.template
src/atlassiancli/templates/autonomous-dev-system/sops/06-monitoring.sop.md.template
src/atlassiancli/templates/autonomous-dev-system/sops/sop-manifest.yaml
src/atlassiancli/templates/product-doc-tree/.docframework.yaml.template
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src/atlassiancli/templates/product-doc-tree/PARITY_LEDGER.md.template
src/atlassiancli/templates/product-doc-tree/README.md.template
src/atlassiancli/templates/product-doc-tree/ROADMAP.md.template
src/atlassiancli/templates/product-doc-tree/product-identity.md.template
src/atlassiancli/templates/product-doc-tree/adrs/0001-example-decision.md.template
src/atlassiancli/templates/product-doc-tree/adrs/README.md.template
src/atlassiancli/templates/product-doc-tree/epics/E-01-example-epic.md.template
src/atlassiancli/templates/product-doc-tree/epics/README.md.template
src/atlassiancli/templates/product-doc-tree/evidence/S1.1-example.md.template
src/atlassiancli/templates/product-doc-tree/stories/README.md.template
src/atlassiancli/templates/product-doc-tree/stories/manifests/S1.1-example.yaml.template
src/inovagio_atlassian.egg-info/PKG-INFO
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src/inovagio_atlassian.egg-info/top_level.txt