.deepsource.toml
.gitattributes
.gitignore
.readthedocs.yml
CITATION.cff
LICENSE
README.md
mkdocs.yml
pyproject.toml
.github/PULL_REQUEST_TEMPLATE.md
.github/workflows/continuous-integration.yml
.github/workflows/deploy.yml
docs/CODE_OF_CONDUCT.md
docs/CONTRIBUTING.md
docs/Field_layout.md
docs/InteractiveShapes.md
docs/analyze_chm.md
docs/analyze_color.md
docs/analyze_coverage.md
docs/analyze_height_percentile.md
docs/analyze_spectral_index.md
docs/center_grid_rois.md
docs/changelog.md
docs/convert_points.md
docs/convert_shapes.md
docs/documentation.md
docs/getting_started.md
docs/image_classes.md
docs/index.md
docs/installation.md
docs/plot_boundary_guide.md
docs/read_geotif.md
docs/read_netcdf.md
docs/requirements.txt
docs/resize.md
docs/shapes_grid.md
docs/shapes_grid_from_coords.md
docs/subtract_dsm.md
docs/to_roi.md
docs/documentation_images/analyze_chm_dist.png
docs/documentation_images/analyze_color.png
docs/documentation_images/analyze_coverage.png
docs/documentation_images/analyze_height_percentile.png
docs/documentation_images/analyze_spectral_index.png
docs/documentation_images/bigspiritlake.png
docs/documentation_images/bisonfly_autogrid.png
docs/documentation_images/bisonfly_irreg.png
docs/documentation_images/bisonfly_irreg_plots.png
docs/documentation_images/bisonfly_sub.png
docs/documentation_images/center_rois.png
docs/documentation_images/drawn_polygons.png
docs/documentation_images/example_GCP.png
docs/documentation_images/field_polygon.png
docs/documentation_images/flexible_cells.png
docs/documentation_images/gray.png
docs/documentation_images/grid_cells.png
docs/documentation_images/grid_field.png
docs/documentation_images/grid_lines.png
docs/documentation_images/grid_polygons.png
docs/documentation_images/indiv_plot_autogrid.png
docs/documentation_images/irregular_grid_cells.png
docs/documentation_images/labeled_mask_from_points.png
docs/documentation_images/multispec_pseudo_rgb.png
docs/documentation_images/napari_clicks.png
docs/documentation_images/napari_shapes.png
docs/documentation_images/resize_after.png
docs/documentation_images/resize_before.png
docs/documentation_images/rgb.png
docs/documentation_images/rois_from_points.png
docs/documentation_images/row_plot_vocab.png
docs/documentation_images/silphium_subfield.png
docs/documentation_images/tef_example.png
docs/documentation_images/tef_napari.png
plantcv/__init__.py
plantcv/geospatial/__init__.py
plantcv/geospatial/_globals.py
plantcv/geospatial/_helpers.py
plantcv/geospatial/center_grid_rois.py
plantcv/geospatial/images.py
plantcv/geospatial/resize.py
plantcv/geospatial/subtract_dsm.py
plantcv/geospatial/transform_polygons.py
plantcv/geospatial/analyze/__init__.py
plantcv/geospatial/analyze/chm.py
plantcv/geospatial/analyze/color.py
plantcv/geospatial/analyze/coverage.py
plantcv/geospatial/analyze/height.py
plantcv/geospatial/analyze/spectral.py
plantcv/geospatial/convert/__init__.py
plantcv/geospatial/convert/points.py
plantcv/geospatial/convert/shapes.py
plantcv/geospatial/convert/to_roi.py
plantcv/geospatial/create_shapes/__init__.py
plantcv/geospatial/create_shapes/auto_grid.py
plantcv/geospatial/create_shapes/grid_from_coords.py
plantcv/geospatial/create_shapes/interactive_shapes.py
plantcv/geospatial/create_shapes/napari_grid.py
plantcv/geospatial/create_shapes/napari_polygon_grid.py
plantcv/geospatial/read/__init__.py
plantcv/geospatial/read/geotif.py
plantcv/geospatial/read/netcdf.py
plantcv_geospatial.egg-info/PKG-INFO
plantcv_geospatial.egg-info/SOURCES.txt
plantcv_geospatial.egg-info/dependency_links.txt
plantcv_geospatial.egg-info/requires.txt
plantcv_geospatial.egg-info/scm_file_list.json
plantcv_geospatial.egg-info/scm_version.json
plantcv_geospatial.egg-info/top_level.txt
tests/__init__.py
tests/conftest.py
tests/test_geospatial.py
tests/test_geospatial_center_grid_rois.py
tests/test_geospatial_helpers.py
tests/test_geospatial_images.py
tests/test_geospatial_resize.py
tests/test_geospatial_subtract_dsm.py
tests/test_geospatial_transform_polygons.py
tests/analyze/test_geospatial_analyze_chm.py
tests/analyze/test_geospatial_analyze_color.py
tests/analyze/test_geospatial_analyze_coverage.py
tests/analyze/test_geospatial_analyze_height_percentile.py
tests/analyze/test_geospatial_analyze_spectral_index.py
tests/convert/test_geospatial_points.py
tests/convert/test_geospatial_shapes.py
tests/convert/test_geospatial_to_roi.py
tests/create_shapes/test_geospatial_interactive_shapes.py
tests/create_shapes/test_geospatial_shape_auto_grid.py
tests/create_shapes/test_geospatial_shape_grid_from_coords.py
tests/read/test_geospatial_read_geotif.py
tests/read/test_geospatial_read_netcdf.py
tests/testdata/615.tif
tests/testdata/cropped_empty.tif
tests/testdata/docs_four_points.geojson
tests/testdata/dsm_test.pkl
tests/testdata/epsg4326points.geojson
tests/testdata/geo_test.pkl
tests/testdata/gray.tif
tests/testdata/multi_img.spectral
tests/testdata/multipoly.geojson
tests/testdata/multipolygon_fortests.geojson
tests/testdata/netcdf_test.geojson
tests/testdata/plot_points.geojson
tests/testdata/point_crop.geojson
tests/testdata/rgb.tif
tests/testdata/rgb_img.spectral
tests/testdata/rgb_uint16.tif
tests/testdata/single_crop.geojson
tests/testdata/single_crop_fid.geojson
tests/testdata/single_crop_noid.geojson
tests/testdata/single_crop_plotid.geojson
tests/testdata/single_points.geojson
tests/testdata/single_test_pts.geojson
tests/testdata/square_crop.geojson
tests/testdata/square_crop_with_fid.geojson
tests/testdata/square_crop_with_id.geojson
tests/testdata/square_crop_with_plot_ids.geojson
tests/testdata/square_crop_with_plotname.geojson
tests/testdata/subset_test.nc
tests/testdata/test_pts.geojson
tests/testdata/test_pts_circles.geojson
tests/testdata/tiefepsg4326.tif