Generated 2021-09-28 with sanpy.analysisVersion 20210803a
Name type default units depends on detection error description
0 analysisVersion str Analysis version when analysis was run. See sanpy.analysisVersion
1 interfaceVersion str Interface version string when analysis was run. See sanpy.interfaceVersion
2 file str Name of raw data file analyzed
3 detectionType None Type of detection, either vm or dvdt. See enum sanpy.bDetection.detectionTypes
4 cellType str User specified cell type
5 sex str User specified sex
6 condition str User specified condition
7 sweep int 0 Sweep number of analyzed sweep. Zero based.
8 sweepSpikeNumber int None Spike number within the sweep. Zero based.
9 spikeNumber int None Spike number across all sweeps. Zero based.
10 include bool True Boolean indication include or not. Can be set by user/programatically after analysis.
11 userType int 0 Integer indication user type. Can be set by user/programatically after analysis.
12 errors list [] List of dictionary to hold detection errors for this spike
13 dvdtThreshold float NaN dvdt dvdtThreshold AP Threshold in derivative dv/dt
14 mvThreshold float NaN mV mvThreshold AP Threshold in primary recording mV
15 medianFilter int 0 medianFilter Median filter to generate filtered vm and dvdt. Value 0 indicates no filter.
16 halfHeights list [] halfHeights List of int to specify half-heights like [10, 20, 50, 80, 90].
17 thresholdPnt int NaN point AP threshold point
18 thresholdSec float NaN sec AP threshold seconds
19 thresholdVal float NaN mV Value of Vm at AP threshold point.
20 thresholdVal_dvdt float NaN dvdt Value of dvdt at AP threshold point.
21 dacCommand float NaN mV Value of DAC command at AP threshold point.
22 peakPnt int NaN point (onlyPeaksAbove_mV, peakWindow_ms) AP peak point.
23 peakSec float NaN sec AP peak seconds.
24 peakVal float NaN mV Value of Vm at AP peak point.
25 peakHeight float NaN mV Difference between peakVal minus thresholdVal.
26 preMinPnt int NaN point mdp_ms Minimum before an AP taken from predefined window.
27 preMinVal float NaN mV Minimum before an AP taken from predefined window.
28 preLinearFitPnt0 int NaN point Point where pre linear fit starts. Used for EDD Rate
29 preLinearFitPnt1 int NaN point Point where pre linear fit stops. Used for EDD Rate
30 earlyDiastolicDuration_ms float NaN ms Time (ms) between start/stop of EDD.
31 preLinearFitVal0 float NaN mv
32 preLinearFitVal1 float NaN mv
33 earlyDiastolicDurationRate float NaN mv/S Early diastolic duration rate, the slope of the linear fit between start/stop of EDD.
34 lateDiastolicDuration float NaN TODO: Not sure this is implemented
35 preSpike_dvdt_max_pnt int NaN point Point corresponding to peak in dv/dt before an AP.
36 preSpike_dvdt_max_val float NaN mV Value of Vm at peak of dv/dt before an AP.
37 preSpike_dvdt_max_val2 float NaN dv/dt Value of dv/dt at peak of dv/dt before an AP.
38 postSpike_dvdt_min_pnt int NaN point dvdtPostWindow_ms Point corresponding to min in dv/dt after an AP.
39 postSpike_dvdt_min_val float NaN mV Value of Vm at minimum of dv/dt after an AP.
40 postSpike_dvdt_min_val2 float NaN dvdt Value of dv/dt at minimum of dv/dt after an AP.
41 isi_pnts int NaN point refractory_ms Inter-Spike-Interval (points) with respect to previous AP.
42 isi_ms float NaN ms Inter-Spike-Interval (ms) with respect to previous AP.
43 spikeFreq_hz float NaN Hz AP frequency with respect to previous AP.
44 cycleLength_pnts int NaN point Points between APs with respect to previous AP.
45 cycleLength_ms int NaN point Time (ms) between APs with respect to previous AP.
46 diastolicDuration_ms float NaN ms Time (ms) between minimum before AP (preMinPnt) and AP time (thresholdPnt).
47 widths list NaN A list of dict to hold half-height information for each half-height in detection halfHeights.
48 widths_10 int NaN percent halfWidthWindow_ms Width (ms) at half-height 10 %.
49 widths_20 int NaN percent halfWidthWindow_ms Width (ms) at half-height 20 %.
50 widths_50 int NaN percent halfWidthWindow_ms Width (ms) at half-height 50 %.
51 widths_80 int NaN percent halfWidthWindow_ms Width (ms) at half-height 80 %.
52 widths_90 int NaN percent halfWidthWindow_ms Width (ms) at half-height 90 %.