biopython>=1.80
biopandas>=0.4
numpy>=1.22
pandas>=1.4
scikit-learn>=1.0
torch>=2.0
torch-geometric>=2.3

[all]
variantfold[dev,dgl,structure,viz]

[dev]
pytest>=7.0
pytest-cov>=4.0
ruff>=0.1

[dgl]
dgl>=1.0

[structure]
colabfold[alphafold-minus-jax]

[viz]
matplotlib>=3.5
seaborn>=0.12
networkx>=2.8
py3Dmol>=1.8
