CHANGELOG.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
CHEWBBACA/__init__.py
CHEWBBACA/chewBBACA.py
CHEWBBACA/AlleleCall/__init__.py
CHEWBBACA/AlleleCall/allele_call.py
CHEWBBACA/AlleleCallEvaluator/__init__.py
CHEWBBACA/AlleleCallEvaluator/evaluate_calls.py
CHEWBBACA/CHEWBBACA_NS/__init__.py
CHEWBBACA/CHEWBBACA_NS/download_schema.py
CHEWBBACA/CHEWBBACA_NS/stats_requests.py
CHEWBBACA/CHEWBBACA_NS/synchronize_schema.py
CHEWBBACA/CHEWBBACA_NS/upload_schema.py
CHEWBBACA/ComputeMSA/compute_msa.py
CHEWBBACA/CreateSchema/__init__.py
CHEWBBACA/CreateSchema/create_schema.py
CHEWBBACA/ExtractCgMLST/__init__.py
CHEWBBACA/ExtractCgMLST/determine_cgmlst.py
CHEWBBACA/GetAlleles/get_alleles.py
CHEWBBACA/PrepExternalSchema/__init__.py
CHEWBBACA/PrepExternalSchema/adapt_schema.py
CHEWBBACA/SchemaEvaluator/__init__.py
CHEWBBACA/SchemaEvaluator/evaluate_schema.py
CHEWBBACA/UniprotFinder/__init__.py
CHEWBBACA/UniprotFinder/annotate_schema.py
CHEWBBACA/prodigal_training_files/Acinetobacter_baumannii.trn
CHEWBBACA/prodigal_training_files/Campylobacter_jejuni.trn
CHEWBBACA/prodigal_training_files/Enterococcus_faecium.trn
CHEWBBACA/prodigal_training_files/Escherichia_coli.trn
CHEWBBACA/prodigal_training_files/Haemophilus_influenzae.trn
CHEWBBACA/prodigal_training_files/Klebsiella_pneumoniae.trn
CHEWBBACA/prodigal_training_files/Legionella_pneumophila.trn
CHEWBBACA/prodigal_training_files/Listeria_monocytogenes.trn
CHEWBBACA/prodigal_training_files/Pseudomonas_aeruginosa.trn
CHEWBBACA/prodigal_training_files/README.md
CHEWBBACA/prodigal_training_files/Salmonella_enterica.trn
CHEWBBACA/prodigal_training_files/Staphylococcus_aureus.trn
CHEWBBACA/prodigal_training_files/Staphylococcus_haemolyticus.trn
CHEWBBACA/prodigal_training_files/Streptococcus_agalactiae.trn
CHEWBBACA/prodigal_training_files/Streptococcus_canis.trn
CHEWBBACA/prodigal_training_files/Streptococcus_dysgalactiae.trn
CHEWBBACA/prodigal_training_files/Streptococcus_equi.trn
CHEWBBACA/prodigal_training_files/Streptococcus_pneumoniae.trn
CHEWBBACA/prodigal_training_files/Streptococcus_pyogenes.trn
CHEWBBACA/prodigal_training_files/Yersinia_enterocolitica.trn
CHEWBBACA/report_template_components/babel.config.js
CHEWBBACA/report_template_components/package-lock.json
CHEWBBACA/report_template_components/package.json
CHEWBBACA/report_template_components/webpack.config.js
CHEWBBACA/report_template_components/src/constants.js
CHEWBBACA/report_template_components/src/index.js
CHEWBBACA/report_template_components/src/bundles/AlleleCallEvaluator/report_bundle.js
CHEWBBACA/report_template_components/src/bundles/SchemaEvaluator/loci_reports/report_bundle.js
CHEWBBACA/report_template_components/src/bundles/SchemaEvaluator/schema_report/report_bundle.js
CHEWBBACA/report_template_components/src/components/AccordionMUI.js
CHEWBBACA/report_template_components/src/components/AlertMUI.js
CHEWBBACA/report_template_components/src/components/App.js
CHEWBBACA/report_template_components/src/components/DataTable.js
CHEWBBACA/report_template_components/src/components/MSA.js
CHEWBBACA/report_template_components/src/components/PhylogeneticTree.js
CHEWBBACA/report_template_components/src/components/PlotlyPlot.js
CHEWBBACA/report_template_components/src/components/TabPanelMUI.js
CHEWBBACA/report_template_components/src/pages/AlleleCallEvaluator/ReportPage.css
CHEWBBACA/report_template_components/src/pages/AlleleCallEvaluator/ReportPage.js
CHEWBBACA/report_template_components/src/pages/SchemaEvaluator/loci_reports/ReportPage.css
CHEWBBACA/report_template_components/src/pages/SchemaEvaluator/loci_reports/ReportPage.js
CHEWBBACA/report_template_components/src/pages/SchemaEvaluator/schema_report/ReportPage.css
CHEWBBACA/report_template_components/src/pages/SchemaEvaluator/schema_report/ReportPage.js
CHEWBBACA/utils/__init__.py
CHEWBBACA/utils/blast_wrapper.py
CHEWBBACA/utils/chewiens_requests.py
CHEWBBACA/utils/constants.py
CHEWBBACA/utils/core_functions.py
CHEWBBACA/utils/distance_matrix.py
CHEWBBACA/utils/fasta_operations.py
CHEWBBACA/utils/fasttree_wrapper.py
CHEWBBACA/utils/file_operations.py
CHEWBBACA/utils/gene_prediction.py
CHEWBBACA/utils/iterables_manipulation.py
CHEWBBACA/utils/join_profiles.py
CHEWBBACA/utils/mafft_wrapper.py
CHEWBBACA/utils/multiprocessing_operations.py
CHEWBBACA/utils/parameters_validation.py
CHEWBBACA/utils/process_datetime.py
CHEWBBACA/utils/profile_hasher.py
CHEWBBACA/utils/profiles_sqlitedb.py
CHEWBBACA/utils/remove_genes.py
CHEWBBACA/utils/sequence_clustering.py
CHEWBBACA/utils/sequence_manipulation.py
CHEWBBACA/utils/uniprot_requests.py
chewBBACA.egg-info/PKG-INFO
chewBBACA.egg-info/SOURCES.txt
chewBBACA.egg-info/dependency_links.txt
chewBBACA.egg-info/entry_points.txt
chewBBACA.egg-info/requires.txt
chewBBACA.egg-info/top_level.txt