LICENSE
MANIFEST.in
README.md
pyproject.toml
cjm_transcript_decomp_core/__init__.py
cjm_transcript_decomp_core/alignment.py
cjm_transcript_decomp_core/cli.py
cjm_transcript_decomp_core/discovery.py
cjm_transcript_decomp_core/graph.py
cjm_transcript_decomp_core/launch.py
cjm_transcript_decomp_core/models.py
cjm_transcript_decomp_core/pipeline.py
cjm_transcript_decomp_core/runs.py
cjm_transcript_decomp_core/segments.py
cjm_transcript_decomp_core/state.py
cjm_transcript_decomp_core.egg-info/PKG-INFO
cjm_transcript_decomp_core.egg-info/SOURCES.txt
cjm_transcript_decomp_core.egg-info/dependency_links.txt
cjm_transcript_decomp_core.egg-info/entry_points.txt
cjm_transcript_decomp_core.egg-info/requires.txt
cjm_transcript_decomp_core.egg-info/top_level.txt
tests/test_alignment.py
tests/test_batch_logic.py
tests/test_cli.py
tests/test_graph.py
tests/test_models.py
tests/test_pipeline.py
tests/test_segment_logic.py