milume

milume

Notebook widgets for spatial omics that stay in sync with Python.

Draw landmarks and selections on tissue coordinates in AnnData. Persist hits as obs_names — analysis stays in the notebook.

pip install milume
Docs Open demo

Try a demo

LandmarksWidget

Lasso, rectangle, ellipse; point, line, spline, shape. Color by category or gene. Neighbor expand runs in the browser. Read selections back with get_obs_names.

LandmarksWidget on colon A2 with mosaic tissue, cells, and a selection

Landmarks guide · API reference · Source on GitHub