biopython>=1.81
gffpandas>=1.2.0
Jinja2>=3.0
kaleido>=1.0.0
numpy<2,>=1.24
oxbow>=0.3.0
pandas<2.3,>=2.0
plotly>=5.14
pyarrow>=10.0.0
pysam>=0.21.0
PyYAML>=6.0
rich>=13.3.3
scipy>=1.10
textual>=0.47.0

[dev]
pytest>=7.0.0
pytest-cov>=4.0.0
pytest-mock>=3.10.0
pytest-xdist>=3.0.0
coverage>=7.0.0
flake8>=6.0.0
black>=23.0.0
sphinx>=5.0.0
mypy>=1.0.0
types-PyYAML>=6.0.12

[pdf]
xhtml2pdf>=0.2.11

[test]
pytest>=7.0.0
pytest-cov>=4.0.0
pytest-mock>=3.10.0
pytest-xdist>=3.0.0
coverage>=7.0.0
