dill
h5py
hfda
hydra-core
ipykernel
joblib
matplotlib
networkx
numpy
optuna
pandas
pyyaml
qiskit==2.2.0
qiskit-aer==0.17.0
qiskit-algorithms==0.4.0
qiskit-ibm-runtime==0.44.0
qiskit-ibm-transpiler==0.11.0
qiskit-machine-learning==0.9.0
qiskit-nature==0.7.2
scikit-dimension
scikit-learn
scipy
seaborn
torch
tqdm
umap-learn
xgboost
scanpy
anndata
leidenalg
igraph

[all]
qbiocode[apps,dev,docs,quvine]

[apps]
hydra-core
joblib

[dev]
pytest>=7.0
pytest-cov>=4.0
nbclient>=0.7
nbformat>=5.0
build>=1.0
black>=23.0
isort>=5.0
flake8>=6.0
mypy>=1.0
types-PyYAML

[docs]
sphinx<9
sphinx-autodoc-typehints
sphinx_rtd_theme
sphinx-design
myst_parser
myst_nb
nbsphinx
better_apidoc
furo
pydata-sphinx-theme

[quvine]
setuptools<81
gensim>=4.4
hiperwalk
node2vec
omegaconf
python-louvain
ripser
torch-geometric
